Analysis of interatomic Contacts of Structural Units in PDB entry:
6E7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E7M entry

There are 4 chains in PDB entry 6E7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LYS 133
B
 THR 1LYS 133
C
 THR 1LYS 133
D
 THR 1LYS 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6E7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
26 34Right-handed alpha
Helix 3
AA3
B
15 23Right-handed alpha
Helix 4
AA4
B
26 34Right-handed alpha
Helix 5
AA5
C
15 23Right-handed alpha
Helix 6
AA6
C
26 33Right-handed alpha
Helix 7
AA7
D
15 23Right-handed alpha
Helix 8
AA8
D
26 34Right-handed alpha
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There are 2 sheets in PDB entry 6E7M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 30 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
81 89anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
105 111anti-parallel
Strand 5
A
114 121anti-parallel
Strand 6
A
124 132anti-parallel
Strand 7
C
6 14anti-parallel
Strand 8
C
37 45anti-parallel
Strand 9
C
48 65anti-parallel
Strand 10
A
48 65anti-parallel
Strand 11
A
38 45anti-parallel
Strand 12
A
6 14anti-parallel
Strand 13
D
70 73anti-parallel
Strand 14
D
81 89anti-parallel
Strand 15
D
92 98anti-parallel
Strand 16
D
105 111anti-parallel
Strand 17
D
114 121anti-parallel
Strand 18
D
124 132anti-parallel
Strand 19
B
6 14anti-parallel
Strand 20
B
37 45anti-parallel
Strand 21
B
48 65anti-parallel
Strand 22
D
48 65anti-parallel
Strand 23
D
38 42anti-parallel
Strand 24
D
6 14anti-parallel
Strand 25
B
124 132anti-parallel
Strand 26
B
114 121anti-parallel
Strand 27
B
105 110anti-parallel
Strand 28
B
92 98anti-parallel
Strand 29
B
81 89anti-parallel
Strand 30
B
70 73anti-parallel
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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
81 89anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
105 111anti-parallel
Strand 5
A
114 121anti-parallel
Strand 6
A
124 132anti-parallel
Strand 7
C
6 14anti-parallel
Strand 8
C
37 45anti-parallel
Strand 9
C
48 65anti-parallel
Strand 10
A
48 65anti-parallel
Strand 11
A
38 45anti-parallel
Strand 12
A
6 14anti-parallel
Strand 13
C
124 132anti-parallel
Strand 14
C
114 121anti-parallel
Strand 15
C
105 111anti-parallel
Strand 16
C
92 98anti-parallel
Strand 17
C
81 89anti-parallel
Strand 18
C
70 73anti-parallel
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