Analysis of interatomic Contacts of Structural Units in PDB entry:
6E7Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E7Y entry

There are 4 chains in PDB entry 6E7Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 38	HIS 526
B	GLU 38	HIS 526
C	GLU 38	HIS 526
D	GLU 38	HIS 526

There are 80 helices in PDB entry 6E7Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	49	Right-handed alpha
Helix 2	AA2	A	51	53	Right-handed 310
Helix 3	AA3	A	54	59	Right-handed alpha
Helix 4	AA4	A	66	93	Right-handed alpha
Helix 5	AA5	A	94	106	Right-handed alpha
Helix 6	AA6	A	123	135	Right-handed alpha
Helix 7	AA7	A	138	143	Right-handed alpha
Helix 8	AA8	A	294	298	Right-handed 310
Helix 9	AA9	A	301	334	Right-handed alpha
Helix 10	AB1	A	354	374	Right-handed alpha
Helix 11	AB2	A	382	399	Right-handed alpha
Helix 12	AB3	A	400	407	Right-handed alpha
Helix 13	AB4	A	411	431	Right-handed alpha
Helix 14	AB5	A	432	447	Right-handed alpha
Helix 15	AB6	A	456	464	Right-handed alpha
Helix 16	AB7	A	473	481	Right-handed alpha
Helix 17	AB8	A	482	484	Right-handed 310
Helix 18	AB9	A	487	501	Right-handed alpha
Helix 19	AC1	A	509	520	Right-handed alpha
Helix 20	AC2	A	521	525	Right-handed 310
Helix 21	AC3	B	41	49	Right-handed alpha
Helix 22	AC4	B	51	53	Right-handed 310
Helix 23	AC5	B	54	59	Right-handed alpha
Helix 24	AC6	B	66	93	Right-handed alpha
Helix 25	AC7	B	94	106	Right-handed alpha
Helix 26	AC8	B	123	135	Right-handed alpha
Helix 27	AC9	B	138	143	Right-handed alpha
Helix 28	AD1	B	294	298	Right-handed 310
Helix 29	AD2	B	301	334	Right-handed alpha
Helix 30	AD3	B	354	374	Right-handed alpha
Helix 31	AD4	B	382	399	Right-handed alpha
Helix 32	AD5	B	400	407	Right-handed alpha
Helix 33	AD6	B	411	431	Right-handed alpha
Helix 34	AD7	B	432	447	Right-handed alpha
Helix 35	AD8	B	456	464	Right-handed alpha
Helix 36	AD9	B	473	481	Right-handed alpha
Helix 37	AE1	B	482	484	Right-handed 310
Helix 38	AE2	B	487	501	Right-handed alpha
Helix 39	AE3	B	509	520	Right-handed alpha
Helix 40	AE4	B	521	525	Right-handed 310
Helix 41	AE5	C	41	49	Right-handed alpha
Helix 42	AE6	C	51	53	Right-handed 310
Helix 43	AE7	C	54	59	Right-handed alpha
Helix 44	AE8	C	66	93	Right-handed alpha
Helix 45	AE9	C	94	106	Right-handed alpha
Helix 46	AF1	C	123	135	Right-handed alpha
Helix 47	AF2	C	138	143	Right-handed alpha
Helix 48	AF3	C	294	298	Right-handed 310
Helix 49	AF4	C	301	334	Right-handed alpha
Helix 50	AF5	C	354	374	Right-handed alpha
Helix 51	AF6	C	382	399	Right-handed alpha
Helix 52	AF7	C	400	407	Right-handed alpha
Helix 53	AF8	C	411	431	Right-handed alpha
Helix 54	AF9	C	432	447	Right-handed alpha
Helix 55	AG1	C	456	464	Right-handed alpha
Helix 56	AG2	C	473	481	Right-handed alpha
Helix 57	AG3	C	482	484	Right-handed 310
Helix 58	AG4	C	487	501	Right-handed alpha
Helix 59	AG5	C	509	520	Right-handed alpha
Helix 60	AG6	C	521	525	Right-handed 310
Helix 61	AG7	D	41	49	Right-handed alpha
Helix 62	AG8	D	51	53	Right-handed 310
Helix 63	AG9	D	54	59	Right-handed alpha
Helix 64	AH1	D	66	93	Right-handed alpha
Helix 65	AH2	D	94	106	Right-handed alpha
Helix 66	AH3	D	123	135	Right-handed alpha
Helix 67	AH4	D	138	143	Right-handed alpha
Helix 68	AH5	D	294	298	Right-handed 310
Helix 69	AH6	D	301	334	Right-handed alpha
Helix 70	AH7	D	354	374	Right-handed alpha
Helix 71	AH8	D	382	399	Right-handed alpha
Helix 72	AH9	D	400	407	Right-handed alpha
Helix 73	AI1	D	411	431	Right-handed alpha
Helix 74	AI2	D	432	447	Right-handed alpha
Helix 75	AI3	D	456	464	Right-handed alpha
Helix 76	AI4	D	473	481	Right-handed alpha
Helix 77	AI5	D	482	484	Right-handed 310
Helix 78	AI6	D	487	501	Right-handed alpha
Helix 79	AI7	D	509	520	Right-handed alpha
Helix 80	AI8	D	521	525	Right-handed 310

There are 8 sheets in PDB entry 6E7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	271	276	anti-parallel
Strand 3	A	258	263	anti-parallel
Strand 4	A	228	235	anti-parallel
Strand 5	A	163	169	anti-parallel
Strand 6	A	193	195	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	253	255	anti-parallel
Strand 3	A	280	282	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	271	276	anti-parallel
Strand 3	B	258	263	anti-parallel
Strand 4	B	228	235	anti-parallel
Strand 5	B	163	169	anti-parallel
Strand 6	B	193	195	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	253	255	anti-parallel
Strand 3	B	280	282	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	271	276	anti-parallel
Strand 3	C	258	263	anti-parallel
Strand 4	C	228	235	anti-parallel
Strand 5	C	163	169	anti-parallel
Strand 6	C	193	195	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	240	first strand
Strand 2	C	253	255	anti-parallel
Strand 3	C	280	282	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	271	276	anti-parallel
Strand 3	D	258	263	anti-parallel
Strand 4	D	228	235	anti-parallel
Strand 5	D	163	169	anti-parallel
Strand 6	D	193	195	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	240	first strand
Strand 2	D	253	255	anti-parallel
Strand 3	D	280	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E7Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E7Y