Analysis of interatomic Contacts of Structural Units in PDB entry:
6E85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E85 entry

There are 2 chains in PDB entry 6E85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2GLU 328
B
 SER 2GLN 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6E85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
39 49Right-handed alpha
Helix 4
AA4
A
62 66Right-handed 310
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
92 112Right-handed alpha
Helix 7
AA7
A
124 131Right-handed alpha
Helix 8
AA8
A
137 147Right-handed alpha
Helix 9
AA9
A
170 178Right-handed alpha
Helix 10
AB1
A
179 198Right-handed alpha
Helix 11
AB2
A
210 215Right-handed 310
Helix 12
AB3
A
221 226Right-handed alpha
Helix 13
AB4
A
226 236Right-handed alpha
Helix 14
AB5
A
246 257Right-handed alpha
Helix 15
AB6
A
266 277Right-handed alpha
Helix 16
AB7
A
312 327Right-handed alpha
Helix 17
AB8
B
15 26Right-handed alpha
Helix 18
AB9
B
39 49Right-handed alpha
Helix 19
AC1
B
62 66Right-handed 310
Helix 20
AC2
B
82 86Right-handed 310
Helix 21
AC3
B
92 113Right-handed alpha
Helix 22
AC4
B
124 131Right-handed alpha
Helix 23
AC5
B
137 147Right-handed alpha
Helix 24
AC6
B
170 178Right-handed alpha
Helix 25
AC7
B
179 197Right-handed alpha
Helix 26
AC8
B
210 215Right-handed 310
Helix 27
AC9
B
221 226Right-handed alpha
Helix 28
AD1
B
226 237Right-handed alpha
Helix 29
AD2
B
246 256Right-handed alpha
Helix 30
AD3
B
266 277Right-handed alpha
Helix 31
AD4
B
312 327Right-handed alpha
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There are 2 sheets in PDB entry 6E85. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
72 77parallel
Strand 3
A
34 38parallel
Strand 4
A
5 8parallel
Strand 5
A
117 120parallel
Strand 6
A
292 295parallel
Strand 7
A
284 287anti-parallel
Strand 8
A
152 156anti-parallel
Strand 9
A
161 164anti-parallel
Strand 10
A
261 264parallel
Strand 11
A
203 207parallel
Strand 12
A
240 245parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
72 77parallel
Strand 3
B
34 38parallel
Strand 4
B
5 8parallel
Strand 5
B
117 120parallel
Strand 6
B
292 295parallel
Strand 7
B
284 287anti-parallel
Strand 8
B
152 156anti-parallel
Strand 9
B
161 164anti-parallel
Strand 10
B
261 264parallel
Strand 11
B
203 207parallel
Strand 12
B
240 245parallel
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