Analysis of interatomic Contacts of Structural Units in PDB entry:
6E8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E8D entry

There are 3 chains in PDB entry 6E8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 25	MET 503
B	ASN 25	MET 503
C	TYR 27	GLN 442

There are 56 helices in PDB entry 6E8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	51	Right-handed alpha
Helix 2	AA2	A	59	62	Right-handed 310
Helix 3	AA3	A	111	120	Right-handed alpha
Helix 4	AA4	A	151	155	Right-handed 310
Helix 5	AA5	A	171	180	Right-handed alpha
Helix 6	AA6	A	181	185	Right-handed 310
Helix 7	AA7	A	191	194	Right-handed 310
Helix 8	AA8	A	237	247	Right-handed alpha
Helix 9	AA9	A	300	311	Right-handed alpha
Helix 10	AB1	A	363	372	Right-handed alpha
Helix 11	AB2	A	430	440	Right-handed alpha
Helix 12	AB3	A	440	447	Right-handed alpha
Helix 13	AB4	A	472	487	Right-handed alpha
Helix 14	AB5	A	496	503	Right-handed alpha
Helix 15	AB6	B	39	50	Right-handed alpha
Helix 16	AB7	B	51	53	Right-handed 310
Helix 17	AB8	B	59	62	Right-handed 310
Helix 18	AB9	B	111	120	Right-handed alpha
Helix 19	AC1	B	151	155	Right-handed 310
Helix 20	AC2	B	171	180	Right-handed alpha
Helix 21	AC3	B	181	185	Right-handed 310
Helix 22	AC4	B	191	194	Right-handed 310
Helix 23	AC5	B	237	247	Right-handed alpha
Helix 24	AC6	B	300	311	Right-handed alpha
Helix 25	AC7	B	363	374	Right-handed alpha
Helix 26	AC8	B	433	440	Right-handed alpha
Helix 27	AC9	B	440	447	Right-handed alpha
Helix 28	AD1	B	472	486	Right-handed alpha
Helix 29	AD2	B	499	503	Right-handed alpha
Helix 30	AD3	C	39	51	Right-handed alpha
Helix 31	AD4	C	59	62	Right-handed 310
Helix 32	AD5	C	111	121	Right-handed alpha
Helix 33	AD6	C	151	155	Right-handed 310
Helix 34	AD7	C	171	180	Right-handed alpha
Helix 35	AD8	C	181	185	Right-handed 310
Helix 36	AD9	C	191	194	Right-handed 310
Helix 37	AE1	C	237	247	Right-handed alpha
Helix 38	AE2	C	283	288	Right-handed 310
Helix 39	AE3	C	300	311	Right-handed alpha
Helix 40	AE4	C	363	374	Right-handed alpha
Helix 41	AE5	C	430	440	Right-handed alpha
Helix 42	AE6	C	472	481	Right-handed alpha
Helix 43	AE7	D	39	51	Right-handed alpha
Helix 44	AE8	D	59	62	Right-handed 310
Helix 45	AE9	D	111	121	Right-handed alpha
Helix 46	AF1	D	132	134	Right-handed 310
Helix 47	AF2	D	153	155	Right-handed 310
Helix 48	AF3	D	171	180	Right-handed alpha
Helix 49	AF4	D	181	185	Right-handed 310
Helix 50	AF5	D	191	194	Right-handed 310
Helix 51	AF6	D	237	247	Right-handed alpha
Helix 52	AF7	D	283	288	Right-handed 310
Helix 53	AF8	D	300	311	Right-handed alpha
Helix 54	AF9	D	363	374	Right-handed alpha
Helix 55	AG1	D	432	440	Right-handed alpha
Helix 56	AG2	D	472	480	Right-handed alpha

There are 16 sheets in PDB entry 6E8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	103	first strand
Strand 2	A	34	38	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	135	140	anti-parallel
Strand 5	A	143	148	anti-parallel
Strand 6	C	342	348	anti-parallel
Strand 7	C	332	338	anti-parallel
Strand 8	C	322	326	anti-parallel
Strand 9	C	358	362	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	110	first strand
Strand 2	A	64	69	anti-parallel
Strand 3	A	73	79	anti-parallel
Strand 4	A	83	90	anti-parallel
Strand 5	A	270	275	anti-parallel
Strand 6	A	262	267	anti-parallel
Strand 7	A	253	258	anti-parallel
Strand 8	A	167	170	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	236	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	205	211	anti-parallel
Strand 4	A	215	222	anti-parallel
Strand 5	A	397	404	anti-parallel
Strand 6	A	390	394	anti-parallel
Strand 7	A	378	383	anti-parallel
Strand 8	A	294	299	anti-parallel
Strand 9	A	352	354	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	362	first strand
Strand 2	A	322	326	anti-parallel
Strand 3	A	332	338	anti-parallel
Strand 4	A	342	348	anti-parallel
Strand 5	C	143	147	anti-parallel
Strand 6	C	135	140	anti-parallel
Strand 7	C	125	132	anti-parallel
Strand 8	C	34	38	anti-parallel
Strand 9	C	99	103	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	418	428	anti-parallel
Strand 3	A	458	465	anti-parallel
Strand 4	A	450	451	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	103	first strand
Strand 2	B	33	38	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	135	140	anti-parallel
Strand 5	B	143	148	anti-parallel
Strand 6	D	342	348	anti-parallel
Strand 7	D	332	338	anti-parallel
Strand 8	D	322	326	anti-parallel
Strand 9	D	358	362	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	64	69	anti-parallel
Strand 3	B	73	79	anti-parallel
Strand 4	B	83	90	anti-parallel
Strand 5	B	270	275	anti-parallel
Strand 6	B	262	267	anti-parallel
Strand 7	B	253	258	anti-parallel
Strand 8	B	166	170	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	236	first strand
Strand 2	B	196	201	anti-parallel
Strand 3	B	205	212	anti-parallel
Strand 4	B	215	222	anti-parallel
Strand 5	B	400	404	anti-parallel
Strand 6	B	390	393	anti-parallel
Strand 7	B	378	383	anti-parallel
Strand 8	B	294	299	anti-parallel
Strand 9	B	352	355	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	362	first strand
Strand 2	B	322	326	anti-parallel
Strand 3	B	332	338	anti-parallel
Strand 4	B	342	348	anti-parallel
Strand 5	D	143	147	anti-parallel
Strand 6	D	135	140	anti-parallel
Strand 7	D	125	131	anti-parallel
Strand 8	D	34	38	anti-parallel
Strand 9	D	99	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	409	first strand
Strand 2	B	417	427	anti-parallel
Strand 3	B	458	465	anti-parallel
Strand 4	B	450	455	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	110	first strand
Strand 2	C	64	69	anti-parallel
Strand 3	C	73	79	anti-parallel
Strand 4	C	83	90	anti-parallel
Strand 5	C	270	275	anti-parallel
Strand 6	C	262	267	anti-parallel
Strand 7	C	253	258	anti-parallel
Strand 8	C	167	170	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	236	first strand
Strand 2	C	196	202	anti-parallel
Strand 3	C	205	211	anti-parallel
Strand 4	C	215	222	anti-parallel
Strand 5	C	400	404	anti-parallel
Strand 6	C	390	393	anti-parallel
Strand 7	C	378	383	anti-parallel
Strand 8	C	294	299	anti-parallel
Strand 9	C	352	355	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	418	427	anti-parallel
Strand 3	C	459	465	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	106	110	anti-parallel
Strand 3	D	64	69	anti-parallel
Strand 4	D	73	79	anti-parallel
Strand 5	D	83	90	anti-parallel
Strand 6	D	270	275	anti-parallel
Strand 7	D	262	267	anti-parallel
Strand 8	D	253	258	anti-parallel
Strand 9	D	167	170	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	236	first strand
Strand 2	D	196	202	anti-parallel
Strand 3	D	205	211	anti-parallel
Strand 4	D	215	222	anti-parallel
Strand 5	D	400	404	anti-parallel
Strand 6	D	390	393	anti-parallel
Strand 7	D	378	383	anti-parallel
Strand 8	D	294	299	anti-parallel
Strand 9	D	352	355	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	409	first strand
Strand 2	D	417	427	anti-parallel
Strand 3	D	459	465	anti-parallel
Strand 4	D	451	453	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E8D