Analysis of interatomic Contacts of Structural Units in PDB entry:
6E8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E8E entry

There are 3 chains in PDB entry 6E8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 25	VAL 427
A	ALA 429	MET 514
B	HIS 37	MET 514

There are 31 helices in PDB entry 6E8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	37	Right-handed alpha
Helix 2	AA2	A	45	56	Right-handed alpha
Helix 3	AA3	A	65	68	Right-handed 310
Helix 4	AA4	A	110	120	Right-handed alpha
Helix 5	AA5	A	150	154	Right-handed 310
Helix 6	AA6	A	169	179	Right-handed alpha
Helix 7	AA7	A	180	184	Right-handed 310
Helix 8	AA8	A	190	194	Right-handed 310
Helix 9	AA9	A	234	244	Right-handed alpha
Helix 10	AB1	A	281	286	Right-handed alpha
Helix 11	AB2	A	298	310	Right-handed alpha
Helix 12	AB3	A	359	370	Right-handed alpha
Helix 13	AB4	A	441	458	Right-handed alpha
Helix 14	AB5	A	475	480	Right-handed alpha
Helix 15	AB6	A	482	495	Right-handed alpha
Helix 16	AB7	A	501	513	Right-handed alpha
Helix 17	AB8	B	45	56	Right-handed alpha
Helix 18	AB9	B	65	68	Right-handed 310
Helix 19	AC1	B	110	120	Right-handed alpha
Helix 20	AC2	B	150	154	Right-handed 310
Helix 21	AC3	B	169	181	Right-handed alpha
Helix 22	AC4	B	182	184	Right-handed 310
Helix 23	AC5	B	190	193	Right-handed 310
Helix 24	AC6	B	235	245	Right-handed alpha
Helix 25	AC7	B	281	286	Right-handed alpha
Helix 26	AC8	B	298	310	Right-handed alpha
Helix 27	AC9	B	359	370	Right-handed alpha
Helix 28	AD1	B	441	457	Right-handed alpha
Helix 29	AD2	B	475	480	Right-handed alpha
Helix 30	AD3	B	482	495	Right-handed alpha
Helix 31	AD4	B	501	513	Right-handed alpha

There are 8 sheets in PDB entry 6E8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	125	131	anti-parallel
Strand 3	A	134	139	anti-parallel
Strand 4	A	142	147	anti-parallel
Strand 5	B	339	345	anti-parallel
Strand 6	B	327	333	anti-parallel
Strand 7	B	318	324	anti-parallel
Strand 8	B	353	358	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	109	first strand
Strand 2	A	70	76	anti-parallel
Strand 3	A	79	85	anti-parallel
Strand 4	A	89	96	anti-parallel
Strand 5	A	268	273	anti-parallel
Strand 6	A	260	265	anti-parallel
Strand 7	A	252	256	anti-parallel
Strand 8	A	164	168	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	233	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	204	210	anti-parallel
Strand 4	A	214	221	anti-parallel
Strand 5	A	392	399	anti-parallel
Strand 6	A	385	389	anti-parallel
Strand 7	A	373	378	anti-parallel
Strand 8	A	292	297	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	318	324	anti-parallel
Strand 3	A	327	333	anti-parallel
Strand 4	A	339	345	anti-parallel
Strand 5	B	142	147	anti-parallel
Strand 6	B	134	139	anti-parallel
Strand 7	B	125	131	anti-parallel
Strand 8	B	40	44	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	439	first strand
Strand 2	A	468	474	anti-parallel
Strand 3	A	461	465	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	109	first strand
Strand 2	B	70	76	anti-parallel
Strand 3	B	79	85	anti-parallel
Strand 4	B	89	96	anti-parallel
Strand 5	B	268	273	anti-parallel
Strand 6	B	260	265	anti-parallel
Strand 7	B	252	256	anti-parallel
Strand 8	B	164	168	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	297	first strand
Strand 2	B	373	378	anti-parallel
Strand 3	B	385	389	anti-parallel
Strand 4	B	395	399	anti-parallel
Strand 5	B	214	234	anti-parallel
Strand 6	B	195	210	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	439	first strand
Strand 2	B	468	474	anti-parallel
Strand 3	B	461	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E8E