Analysis of interatomic Contacts of Structural Units in PDB entry:
6E8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E8J entry

There is 1 chain in PDB entry 6E8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 19ALA 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6E8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 45Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
59 68Right-handed alpha
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
78 88Right-handed alpha
Helix 6
AA6
A
92 111Right-handed alpha
Helix 7
AA7
A
114 130Right-handed alpha
Helix 8
AA8
A
132 144Right-handed alpha
Helix 9
AA9
A
145 175Right-handed alpha
Helix 10
AB1
A
178 189Right-handed alpha
Helix 11
AB2
A
191 196Right-handed alpha
Helix 12
AB3
A
199 203Right-handed 310
Helix 13
AB4
A
204 215Right-handed alpha
Helix 14
AB5
A
216 228Right-handed alpha
Helix 15
AB6
A
254 258Right-handed 310
Helix 16
AB7
A
259 292Right-handed alpha
Helix 17
AB8
A
294 301Right-handed alpha
Helix 18
AB9
A
302 324Right-handed alpha
Helix 19
AC1
A
337 353Right-handed alpha
Helix 20
AC2
A
355 383Right-handed alpha
Helix 21
AC3
A
384 385Right-handed 310
Helix 22
AC4
A
386 388Right-handed 310
Helix 23
AC5
A
389 429Right-handed alpha
Helix 24
AC6
A
430 435Right-handed alpha
Helix 25
AC7
A
436 437Right-handed 310
Helix 26
AC8
A
438 444Right-handed 310
Helix 27
AC9
A
446 450Right-handed 310
Helix 28
AD1
A
452 493Right-handed alpha
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There are no sheets in PDB entry 6E8J
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il