Analysis of interatomic Contacts of Structural Units in PDB entry:
6E8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E8O entry

There are 2 chains in PDB entry 6E8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	ASP 540
B	GLY 4	ASP 540

There are 43 helices in PDB entry 6E8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	19	Right-handed alpha
Helix 2	AA2	A	26	38	Right-handed alpha
Helix 3	AA3	A	53	71	Right-handed alpha
Helix 4	AA4	A	86	98	Right-handed alpha
Helix 5	AA5	A	110	122	Right-handed alpha
Helix 6	AA6	A	137	148	Right-handed alpha
Helix 7	AA7	A	167	171	Right-handed 310
Helix 8	AA8	A	175	179	Right-handed 310
Helix 9	AA9	A	207	221	Right-handed alpha
Helix 10	AB1	A	237	243	Right-handed alpha
Helix 11	AB2	A	244	253	Right-handed alpha
Helix 12	AB3	A	263	275	Right-handed alpha
Helix 13	AB4	A	282	295	Right-handed alpha
Helix 14	AB5	A	317	322	Right-handed alpha
Helix 15	AB6	A	323	329	Right-handed alpha
Helix 16	AB7	A	351	358	Right-handed alpha
Helix 17	AB8	A	401	409	Right-handed alpha
Helix 18	AB9	A	447	457	Right-handed alpha
Helix 19	AC1	A	490	502	Right-handed alpha
Helix 20	AC2	A	504	508	Right-handed 310
Helix 21	AC3	A	527	539	Right-handed alpha
Helix 22	AC4	B	9	19	Right-handed alpha
Helix 23	AC5	B	26	38	Right-handed alpha
Helix 24	AC6	B	53	71	Right-handed alpha
Helix 25	AC7	B	86	99	Right-handed alpha
Helix 26	AC8	B	110	121	Right-handed alpha
Helix 27	AC9	B	137	147	Right-handed alpha
Helix 28	AD1	B	167	170	Right-handed 310
Helix 29	AD2	B	175	179	Right-handed 310
Helix 30	AD3	B	207	221	Right-handed alpha
Helix 31	AD4	B	237	243	Right-handed alpha
Helix 32	AD5	B	244	253	Right-handed alpha
Helix 33	AD6	B	263	275	Right-handed alpha
Helix 34	AD7	B	282	295	Right-handed alpha
Helix 35	AD8	B	317	322	Right-handed alpha
Helix 36	AD9	B	323	329	Right-handed alpha
Helix 37	AE1	B	351	358	Right-handed alpha
Helix 38	AE2	B	401	409	Right-handed alpha
Helix 39	AE3	B	448	458	Right-handed alpha
Helix 40	AE4	B	490	502	Right-handed alpha
Helix 41	AE5	B	504	508	Right-handed 310
Helix 42	AE6	B	522	526	Right-handed 310
Helix 43	AE7	B	527	539	Right-handed alpha

There are 14 sheets in PDB entry 6E8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	255	258	parallel
Strand 4	A	228	231	parallel
Strand 5	A	278	281	parallel
Strand 6	A	308	312	parallel
Strand 7	A	331	338	parallel
Strand 8	A	341	345	anti-parallel
Strand 9	A	361	362	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	77	80	parallel
Strand 3	A	125	129	parallel
Strand 4	A	153	157	parallel
Strand 5	A	164	165	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	135	136	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	202	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	372	first strand
Strand 2	A	385	390	anti-parallel
Strand 3	A	415	423	anti-parallel
Strand 4	A	429	434	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	441	first strand
Strand 2	A	444	446	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	471	first strand
Strand 2	A	475	484	anti-parallel
Strand 3	A	511	514	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	255	258	parallel
Strand 4	B	228	231	parallel
Strand 5	B	278	281	parallel
Strand 6	B	308	312	parallel
Strand 7	B	331	338	parallel
Strand 8	B	341	345	anti-parallel
Strand 9	B	361	362	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	77	80	parallel
Strand 3	B	125	129	parallel
Strand 4	B	153	157	parallel
Strand 5	B	164	165	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	135	136	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	202	206	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	372	first strand
Strand 2	B	385	390	anti-parallel
Strand 3	B	415	423	anti-parallel
Strand 4	B	429	434	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	441	first strand
Strand 2	B	444	447	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	471	first strand
Strand 2	B	475	483	anti-parallel
Strand 3	B	511	514	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E8O