Analysis of interatomic Contacts of Structural Units in PDB entry:
6E9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E9E entry

There are 2 chains in PDB entry 6E9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 C 1 A 51
A
 THR 58SER 950
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6E9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
159 167Right-handed alpha
Helix 2
AA2
A
175 204Right-handed alpha
Helix 3
AA3
A
225 230Right-handed alpha
Helix 4
AA4
A
231 234Right-handed 310
Helix 5
AA5
A
237 252Right-handed alpha
Helix 6
AA6
A
253 258Right-handed 310
Helix 7
AA7
A
259 263Right-handed alpha
Helix 8
AA8
A
280 299Right-handed alpha
Helix 9
AA9
A
305 309Right-handed 310
Helix 10
AB1
A
317 336Right-handed alpha
Helix 11
AB2
A
343 352Right-handed alpha
Helix 12
AB3
A
358 371Right-handed alpha
Helix 13
AB4
A
373 377Right-handed 310
Helix 14
AB5
A
381 390Right-handed alpha
Helix 15
AB6
A
403 422Right-handed alpha
Helix 16
AB7
A
423 436Right-handed alpha
Helix 17
AB8
A
439 458Right-handed alpha
Helix 18
AB9
A
459 467Right-handed alpha
Helix 19
AC1
A
468 470Right-handed 310
Helix 20
AC2
A
471 479Right-handed alpha
Helix 21
AC3
A
488 492Right-handed 310
Helix 22
AC4
A
501 512Right-handed alpha
Helix 23
AC5
A
515 543Right-handed alpha
Helix 24
AC6
A
553 557Right-handed 310
Helix 25
AC7
A
558 573Right-handed alpha
Helix 26
AC8
A
583 593Right-handed alpha
Helix 27
AC9
A
601 613Right-handed alpha
Helix 28
AD1
A
627 636Right-handed alpha
Helix 29
AD2
A
642 650Right-handed alpha
Helix 30
AD3
A
651 659Right-handed alpha
Helix 31
AD4
A
661 670Right-handed alpha
Helix 32
AD5
A
673 685Right-handed alpha
Helix 33
AD6
A
693 707Right-handed alpha
Helix 34
AD7
A
709 714Right-handed 310
Helix 35
AD8
A
728 779Right-handed alpha
Helix 36
AD9
A
791 799Right-handed alpha
Helix 37
AE1
A
812 818Right-handed alpha
Helix 38
AE2
A
827 838Right-handed alpha
Helix 39
AE3
A
841 853Right-handed alpha
Helix 40
AE4
A
855 860Right-handed alpha
Helix 41
AE5
A
873 888Right-handed alpha
Helix 42
AE6
A
896 909Right-handed alpha
Helix 43
AE7
A
913 921Right-handed alpha
Helix 44
AE8
A
927 936Right-handed alpha
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There are 5 sheets in PDB entry 6E9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
76 77anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
88 90anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 100anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
119 123anti-parallel
Strand 3
A
130 133anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
276 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il