Analysis of interatomic Contacts of Structural Units in PDB entry:
6E9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E9F entry

There are 3 chains in PDB entry 6E9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 58SER 950
B
 C 1 A 52
C
 A 1 U 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 6E9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 65Right-handed alpha
Helix 2
AA2
A
159 168Right-handed alpha
Helix 3
AA3
A
177 182Right-handed alpha
Helix 4
AA4
A
183 188Right-handed 310
Helix 5
AA5
A
199 204Right-handed alpha
Helix 6
AA6
A
229 233Right-handed 310
Helix 7
AA7
A
239 252Right-handed alpha
Helix 8
AA8
A
254 258Right-handed 310
Helix 9
AA9
A
259 263Right-handed alpha
Helix 10
AB1
A
280 298Right-handed alpha
Helix 11
AB2
A
309 316Right-handed 310
Helix 12
AB3
A
317 328Right-handed alpha
Helix 13
AB4
A
328 333Right-handed alpha
Helix 14
AB5
A
338 343Right-handed alpha
Helix 15
AB6
A
343 355Right-handed alpha
Helix 16
AB7
A
358 371Right-handed alpha
Helix 17
AB8
A
381 390Right-handed alpha
Helix 18
AB9
A
398 402Right-handed 310
Helix 19
AC1
A
403 422Right-handed alpha
Helix 20
AC2
A
423 435Right-handed alpha
Helix 21
AC3
A
442 445Right-handed 310
Helix 22
AC4
A
446 467Right-handed alpha
Helix 23
AC5
A
472 478Right-handed alpha
Helix 24
AC6
A
489 493Right-handed 310
Helix 25
AC7
A
501 511Right-handed alpha
Helix 26
AC8
A
515 520Right-handed alpha
Helix 27
AC9
A
524 535Right-handed alpha
Helix 28
AD1
A
536 539Right-handed 310
Helix 29
AD2
A
558 571Right-handed alpha
Helix 30
AD3
A
582 595Right-handed alpha
Helix 31
AD4
A
601 604Right-handed 310
Helix 32
AD5
A
605 614Right-handed alpha
Helix 33
AD6
A
628 640Right-handed alpha
Helix 34
AD7
A
640 647Right-handed alpha
Helix 35
AD8
A
651 655Right-handed 310
Helix 36
AD9
A
661 669Right-handed alpha
Helix 37
AE1
A
673 682Right-handed alpha
Helix 38
AE2
A
693 706Right-handed alpha
Helix 39
AE3
A
728 739Right-handed alpha
Helix 40
AE4
A
740 758Right-handed alpha
Helix 41
AE5
A
758 777Right-handed alpha
Helix 42
AE6
A
791 797Right-handed alpha
Helix 43
AE7
A
826 838Right-handed alpha
Helix 44
AE8
A
841 853Right-handed alpha
Helix 45
AE9
A
873 890Right-handed alpha
Helix 46
AF1
A
896 909Right-handed alpha
Helix 47
AF2
A
915 920Right-handed alpha
Helix 48
AF3
A
921 926Right-handed 310
Helix 49
AF4
A
927 934Right-handed alpha
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There are 5 sheets in PDB entry 6E9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
76 77anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
88 90anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
98 101anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 114first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
132 134anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
277 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il