Analysis of interatomic Contacts of Structural Units in PDB entry:
6E9I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E9I entry

There are 6 chains in PDB entry 6E9I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 27	SER 299
B	ALA 2	SER 217
C	GLN 27	CYS 296
D	ALA 2	CYS 216
H	GLN 27	ASP 297
L	VAL 3	ASN 163

There are 32 helices in PDB entry 6E9I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed 310
Helix 2	AA2	A	112	116	Right-handed 310
Helix 3	AA3	A	149	154	Right-handed 310
Helix 4	AA4	A	281	284	Right-handed 310
Helix 5	AA5	B	29	33	Right-handed 310
Helix 6	AA6	B	81	85	Right-handed 310
Helix 7	AA7	B	126	131	Right-handed alpha
Helix 8	AA8	B	187	192	Right-handed alpha
Helix 9	AA9	B	212	216	Right-handed 310
Helix 10	AB1	C	52	56	Right-handed 310
Helix 11	AB2	C	87	90	Right-handed 310
Helix 12	AB3	C	112	116	Right-handed 310
Helix 13	AB4	C	144	148	Right-handed 310
Helix 14	AB5	C	149	154	Right-handed 310
Helix 15	AB6	C	237	239	Right-handed 310
Helix 16	AB7	C	281	284	Right-handed 310
Helix 17	AB8	D	29	33	Right-handed 310
Helix 18	AB9	D	81	85	Right-handed 310
Helix 19	AC1	D	126	131	Right-handed alpha
Helix 20	AC2	D	187	193	Right-handed alpha
Helix 21	AC3	D	212	216	Right-handed 310
Helix 22	AC4	H	52	56	Right-handed 310
Helix 23	AC5	H	89	91	Right-handed 310
Helix 24	AC6	H	112	116	Right-handed 310
Helix 25	AC7	H	149	154	Right-handed 310
Helix 26	AC8	H	237	239	Right-handed 310
Helix 27	AC9	H	253	255	Right-handed 310
Helix 28	AD1	H	281	284	Right-handed 310
Helix 29	AD2	L	29	33	Right-handed 310
Helix 30	AD3	L	126	131	Right-handed alpha
Helix 31	AD4	L	187	193	Right-handed alpha
Helix 32	AD5	L	212	216	Right-handed 310

There are 39 sheets in PDB entry 6E9I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	44	51	anti-parallel
Strand 3	A	103	108	anti-parallel
Strand 4	A	93	98	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	188	192	parallel
Strand 3	A	117	133	anti-parallel
Strand 4	A	59	65	anti-parallel
Strand 5	A	71	77	anti-parallel
Strand 6	A	83	85	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	188	192	parallel
Strand 3	A	117	133	anti-parallel
Strand 4	A	172	184	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	157	161	anti-parallel
Strand 3	A	165	169	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	206	first strand
Strand 2	A	217	226	anti-parallel
Strand 3	A	257	265	anti-parallel
Strand 4	A	244	246	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	206	first strand
Strand 2	A	217	226	anti-parallel
Strand 3	A	257	265	anti-parallel
Strand 4	A	250	251	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	235	first strand
Strand 2	A	275	280	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	106	111	parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	47	51	anti-parallel
Strand 6	B	55	56	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	106	111	parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	100	102	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	64	69	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	177	186	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	177	186	anti-parallel
Strand 4	B	170	171	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	150	155	anti-parallel
Strand 3	B	196	202	anti-parallel
Strand 4	B	205	211	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	44	51	anti-parallel
Strand 3	C	103	108	anti-parallel
Strand 4	C	93	98	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	188	192	parallel
Strand 3	C	117	133	anti-parallel
Strand 4	C	59	65	anti-parallel
Strand 5	C	72	77	anti-parallel
Strand 6	C	83	85	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	188	192	parallel
Strand 3	C	117	133	anti-parallel
Strand 4	C	172	184	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	157	161	anti-parallel
Strand 3	C	165	169	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	206	first strand
Strand 2	C	218	226	anti-parallel
Strand 3	C	257	264	anti-parallel
Strand 4	C	244	246	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	206	first strand
Strand 2	C	218	226	anti-parallel
Strand 3	C	257	264	anti-parallel
Strand 4	C	250	251	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	235	first strand
Strand 2	C	274	280	anti-parallel
Strand 3	C	285	291	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	51	anti-parallel
Strand 6	D	55	56	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	100	102	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	134	144	anti-parallel
Strand 3	D	177	186	anti-parallel
Strand 4	D	164	166	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	134	144	anti-parallel
Strand 3	D	177	186	anti-parallel
Strand 4	D	170	171	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	196	202	anti-parallel
Strand 4	D	205	211	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	33	first strand
Strand 2	H	44	51	anti-parallel
Strand 3	H	103	108	anti-parallel
Strand 4	H	93	98	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	188	192	parallel
Strand 3	H	117	133	anti-parallel
Strand 4	H	59	65	anti-parallel
Strand 5	H	72	77	anti-parallel
Strand 6	H	83	85	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	188	192	parallel
Strand 3	H	117	133	anti-parallel
Strand 4	H	172	184	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	140	first strand
Strand 2	H	157	161	anti-parallel
Strand 3	H	165	169	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	201	206	first strand
Strand 2	H	217	226	anti-parallel
Strand 3	H	257	265	anti-parallel
Strand 4	H	244	246	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	201	206	first strand
Strand 2	H	217	226	anti-parallel
Strand 3	H	257	265	anti-parallel
Strand 4	H	250	251	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	235	first strand
Strand 2	H	274	280	anti-parallel
Strand 3	H	285	291	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	14	first strand
Strand 2	L	106	111	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	35	40	anti-parallel
Strand 5	L	47	51	anti-parallel
Strand 6	L	55	56	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	14	first strand
Strand 2	L	106	111	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	100	102	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	24	first strand
Strand 2	L	72	78	anti-parallel
Strand 3	L	64	69	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	134	144	anti-parallel
Strand 3	L	177	186	anti-parallel
Strand 4	L	164	166	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	134	144	anti-parallel
Strand 3	L	177	186	anti-parallel
Strand 4	L	170	171	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	160	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	205	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E9I

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E9I