Analysis of interatomic Contacts of Structural Units in PDB entry:
6EA7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EA7 entry

There are 12 chains in PDB entry 6EA7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	PHE 194
B	ALA 507	PRO 612
C	SER 32	LYS 190
D	PRO 509	PRO 612
E	SER 32	PRO 187
F	LYS 510	PRO 612
H	VAL 2	PRO 222
L	ASP 1	GLU 212
M	VAL 2	SER 224
N	ASP 1	GLU 212
Q	GLN 1	PRO 222
R	ASP 1	GLY 211

There are 27 helices in PDB entry 6EA7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	61	Right-handed 310
Helix 2	AA2	A	78	85	Right-handed alpha
Helix 3	AA3	B	551	576	Right-handed alpha
Helix 4	AA4	B	583	598	Right-handed alpha
Helix 5	AA5	C	71	74	Right-handed 310
Helix 6	AA6	C	78	85	Right-handed alpha
Helix 7	AA7	D	552	576	Right-handed alpha
Helix 8	AA8	D	583	598	Right-handed alpha
Helix 9	AA9	E	59	61	Right-handed 310
Helix 10	AB1	E	71	74	Right-handed 310
Helix 11	AB2	E	78	85	Right-handed alpha
Helix 12	AB3	F	551	576	Right-handed alpha
Helix 13	AB4	F	583	598	Right-handed alpha
Helix 14	AB5	H	196	201	Right-handed alpha
Helix 15	AB6	L	79	83	Right-handed 310
Helix 16	AB7	L	120	127	Right-handed alpha
Helix 17	AB8	L	182	188	Right-handed alpha
Helix 18	AB9	M	87	91	Right-handed 310
Helix 19	AC1	M	194	201	Right-handed alpha
Helix 20	AC2	N	79	83	Right-handed 310
Helix 21	AC3	N	120	127	Right-handed alpha
Helix 22	AC4	N	182	188	Right-handed alpha
Helix 23	AC5	Q	87	91	Right-handed 310
Helix 24	AC6	Q	195	201	Right-handed alpha
Helix 25	AC7	R	79	83	Right-handed 310
Helix 26	AC8	R	120	127	Right-handed alpha
Helix 27	AC9	R	182	188	Right-handed alpha

There are 47 sheets in PDB entry 6EA7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	63	69	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	159	161	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	96	97	anti-parallel
Strand 3	B	580	581	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	B	515	519	anti-parallel
Strand 3	B	544	548	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	114	first strand
Strand 2	A	135	144	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	610	611	first strand
Strand 2	D	601	602	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	36	38	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	63	69	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	36	38	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	159	161	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	96	97	anti-parallel
Strand 3	D	580	581	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	D	515	519	anti-parallel
Strand 3	D	544	548	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	114	first strand
Strand 2	C	135	144	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	610	611	first strand
Strand 2	F	601	602	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	36	38	anti-parallel
Strand 3	E	177	185	parallel
Strand 4	E	63	69	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	36	38	anti-parallel
Strand 3	E	177	185	parallel
Strand 4	E	159	161	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	151	154	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	167	first strand
Strand 2	E	96	98	anti-parallel
Strand 3	F	580	581	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	F	515	519	anti-parallel
Strand 3	F	544	548	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	114	first strand
Strand 2	E	135	144	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	116	119	parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	145	154	anti-parallel
Strand 3	H	185	193	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	203	209	anti-parallel
Strand 3	H	214	220	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	72	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	101	104	parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	144	149	first strand
Strand 2	L	190	196	anti-parallel
Strand 3	L	204	209	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	5	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	11	first strand
Strand 2	M	116	119	parallel
Strand 3	M	92	99	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	58	60	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	11	first strand
Strand 2	M	116	119	parallel
Strand 3	M	92	99	anti-parallel
Strand 4	M	109	112	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	133	first strand
Strand 2	M	145	154	anti-parallel
Strand 3	M	185	193	anti-parallel
Strand 4	M	172	174	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	160	163	first strand
Strand 2	M	204	209	anti-parallel
Strand 3	M	214	219	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	6	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	72	75	anti-parallel
Strand 4	N	62	65	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	102	105	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	45	49	anti-parallel
Strand 3	N	34	38	anti-parallel
Strand 4	N	85	89	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	113	117	first strand
Strand 2	N	128	138	anti-parallel
Strand 3	N	172	181	anti-parallel
Strand 4	N	158	162	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	153	154	first strand
Strand 2	N	144	149	anti-parallel
Strand 3	N	190	196	anti-parallel
Strand 4	N	204	209	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	5	first strand
Strand 2	Q	18	25	anti-parallel
Strand 3	Q	78	83	anti-parallel
Strand 4	Q	68	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	11	first strand
Strand 2	Q	116	119	parallel
Strand 3	Q	92	98	anti-parallel
Strand 4	Q	35	39	anti-parallel
Strand 5	Q	45	51	anti-parallel
Strand 6	Q	58	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	11	first strand
Strand 2	Q	116	119	parallel
Strand 3	Q	92	98	anti-parallel
Strand 4	Q	111	112	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	129	133	first strand
Strand 2	Q	145	154	anti-parallel
Strand 3	Q	185	193	anti-parallel
Strand 4	Q	172	174	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	159	163	first strand
Strand 2	Q	204	209	anti-parallel
Strand 3	Q	214	219	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	4	6	first strand
Strand 2	R	19	25	anti-parallel
Strand 3	R	72	75	anti-parallel
Strand 4	R	62	65	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	13	first strand
Strand 2	R	101	105	parallel
Strand 3	R	85	89	anti-parallel
Strand 4	R	34	38	anti-parallel
Strand 5	R	45	49	anti-parallel
Strand 6	R	53	54	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	113	117	first strand
Strand 2	R	128	138	anti-parallel
Strand 3	R	172	181	anti-parallel
Strand 4	R	158	162	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	153	154	first strand
Strand 2	R	144	149	anti-parallel
Strand 3	R	190	196	anti-parallel
Strand 4	R	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EA7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EA7