Analysis of interatomic Contacts of Structural Units in PDB entry:
6EB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EB0 entry

There are 3 chains in PDB entry 6EB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	LEU 519
B	LYS 2	LEU 519
C	LYS 2	ASP 231

There are115 helices in PDB entry 6EB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed 310
Helix 2	AA2	A	15	23	Right-handed alpha
Helix 3	AA3	A	45	59	Right-handed alpha
Helix 4	AA4	A	61	68	Right-handed alpha
Helix 5	AA5	A	83	85	Right-handed 310
Helix 6	AA6	A	89	106	Right-handed alpha
Helix 7	AA7	A	114	128	Right-handed alpha
Helix 8	AA8	A	129	134	Right-handed 310
Helix 9	AA9	A	135	150	Right-handed alpha
Helix 10	AB1	A	167	172	Right-handed alpha
Helix 11	AB2	A	173	175	Right-handed 310
Helix 12	AB3	A	198	201	Right-handed 310
Helix 13	AB4	A	217	220	Right-handed 310
Helix 14	AB5	A	240	249	Right-handed alpha
Helix 15	AB6	A	256	261	Right-handed alpha
Helix 16	AB7	A	284	295	Right-handed alpha
Helix 17	AB8	A	296	299	Right-handed 310
Helix 18	AB9	A	300	328	Right-handed alpha
Helix 19	AC1	A	329	331	Right-handed 310
Helix 20	AC2	A	332	359	Right-handed alpha
Helix 21	AC3	A	371	397	Right-handed alpha
Helix 22	AC4	A	407	412	Right-handed alpha
Helix 23	AC5	A	413	424	Right-handed alpha
Helix 24	AC6	A	431	447	Right-handed alpha
Helix 25	AC7	A	448	461	Right-handed alpha
Helix 26	AC8	A	464	479	Right-handed alpha
Helix 27	AC9	A	480	495	Right-handed alpha
Helix 28	AD1	A	514	519	Right-handed alpha
Helix 29	AD2	B	2	7	Right-handed 310
Helix 30	AD3	B	15	23	Right-handed alpha
Helix 31	AD4	B	45	59	Right-handed alpha
Helix 32	AD5	B	61	68	Right-handed alpha
Helix 33	AD6	B	83	85	Right-handed 310
Helix 34	AD7	B	89	106	Right-handed alpha
Helix 35	AD8	B	114	128	Right-handed alpha
Helix 36	AD9	B	129	134	Right-handed 310
Helix 37	AE1	B	135	150	Right-handed alpha
Helix 38	AE2	B	167	172	Right-handed alpha
Helix 39	AE3	B	173	175	Right-handed 310
Helix 40	AE4	B	198	201	Right-handed 310
Helix 41	AE5	B	217	220	Right-handed 310
Helix 42	AE6	B	240	249	Right-handed alpha
Helix 43	AE7	B	256	261	Right-handed alpha
Helix 44	AE8	B	284	295	Right-handed alpha
Helix 45	AE9	B	296	299	Right-handed 310
Helix 46	AF1	B	300	328	Right-handed alpha
Helix 47	AF2	B	329	331	Right-handed 310
Helix 48	AF3	B	332	359	Right-handed alpha
Helix 49	AF4	B	371	397	Right-handed alpha
Helix 50	AF5	B	407	412	Right-handed alpha
Helix 51	AF6	B	413	424	Right-handed alpha
Helix 52	AF7	B	431	447	Right-handed alpha
Helix 53	AF8	B	448	461	Right-handed alpha
Helix 54	AF9	B	464	479	Right-handed alpha
Helix 55	AG1	B	480	495	Right-handed alpha
Helix 56	AG2	B	514	519	Right-handed alpha
Helix 57	AG3	C	2	7	Right-handed 310
Helix 58	AG4	C	15	23	Right-handed alpha
Helix 59	AG5	C	45	59	Right-handed alpha
Helix 60	AG6	C	61	68	Right-handed alpha
Helix 61	AG7	C	83	85	Right-handed 310
Helix 62	AG8	C	89	106	Right-handed alpha
Helix 63	AG9	C	114	128	Right-handed alpha
Helix 64	AH1	C	129	134	Right-handed 310
Helix 65	AH2	C	135	150	Right-handed alpha
Helix 66	AH3	C	167	172	Right-handed alpha
Helix 67	AH4	C	173	175	Right-handed 310
Helix 68	AH5	C	198	201	Right-handed 310
Helix 69	AH6	C	217	220	Right-handed 310
Helix 70	AH7	C	240	249	Right-handed alpha
Helix 71	AH8	C	256	261	Right-handed alpha
Helix 72	AH9	C	275	277	Right-handed 310
Helix 73	AI1	C	284	295	Right-handed alpha
Helix 74	AI2	C	296	299	Right-handed 310
Helix 75	AI3	C	300	328	Right-handed alpha
Helix 76	AI4	C	329	331	Right-handed 310
Helix 77	AI5	C	332	359	Right-handed alpha
Helix 78	AI6	C	371	397	Right-handed alpha
Helix 79	AI7	C	407	413	Right-handed alpha
Helix 80	AI8	C	413	424	Right-handed alpha
Helix 81	AI9	C	431	447	Right-handed alpha
Helix 82	AJ1	C	448	461	Right-handed alpha
Helix 83	AJ2	C	464	479	Right-handed alpha
Helix 84	AJ3	C	480	495	Right-handed alpha
Helix 85	AJ4	C	514	519	Right-handed alpha
Helix 86	AJ5	D	2	7	Right-handed 310
Helix 87	AJ6	D	15	23	Right-handed alpha
Helix 88	AJ7	D	45	59	Right-handed alpha
Helix 89	AJ8	D	64	68	Right-handed alpha
Helix 90	AJ9	D	83	85	Right-handed 310
Helix 91	AK1	D	89	105	Right-handed alpha
Helix 92	AK2	D	106	108	Right-handed 310
Helix 93	AK3	D	114	128	Right-handed alpha
Helix 94	AK4	D	129	134	Right-handed 310
Helix 95	AK5	D	135	150	Right-handed alpha
Helix 96	AK6	D	167	172	Right-handed alpha
Helix 97	AK7	D	173	175	Right-handed 310
Helix 98	AK8	D	198	201	Right-handed 310
Helix 99	AK9	D	217	220	Right-handed 310
Helix 100	AL1	D	240	249	Right-handed alpha
Helix 101	AL2	D	256	261	Right-handed alpha
Helix 102	AL3	D	275	277	Right-handed 310
Helix 103	AL4	D	284	295	Right-handed alpha
Helix 104	AL5	D	296	299	Right-handed 310
Helix 105	AL6	D	300	328	Right-handed alpha
Helix 106	AL7	D	329	331	Right-handed 310
Helix 107	AL8	D	332	359	Right-handed alpha
Helix 108	AL9	D	371	397	Right-handed alpha
Helix 109	AM1	D	407	412	Right-handed alpha
Helix 110	AM2	D	413	424	Right-handed alpha
Helix 111	AM3	D	431	447	Right-handed alpha
Helix 112	AM4	D	448	461	Right-handed alpha
Helix 113	AM5	D	464	479	Right-handed alpha
Helix 114	AM6	D	480	495	Right-handed alpha
Helix 115	AM7	D	514	519	Right-handed alpha

There are 20 sheets in PDB entry 6EB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	28	31	anti-parallel
Strand 3	A	233	236	parallel
Strand 4	A	264	275	anti-parallel
Strand 5	A	185	196	anti-parallel
Strand 6	A	177	181	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	79	81	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	203	206	parallel
Strand 3	A	222	227	anti-parallel
Strand 4	A	279	282	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	368	369	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	500	501	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	233	236	parallel
Strand 4	B	264	275	anti-parallel
Strand 5	B	185	196	anti-parallel
Strand 6	B	177	181	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	79	81	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	203	206	parallel
Strand 3	B	222	227	anti-parallel
Strand 4	B	279	282	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	368	369	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	497	first strand
Strand 2	B	500	501	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	28	31	anti-parallel
Strand 3	C	233	236	parallel
Strand 4	C	264	274	anti-parallel
Strand 5	C	185	196	anti-parallel
Strand 6	C	177	182	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	71	first strand
Strand 2	C	79	81	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	203	206	parallel
Strand 3	C	222	227	anti-parallel
Strand 4	C	279	282	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	368	369	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	500	501	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	28	31	anti-parallel
Strand 3	D	233	236	parallel
Strand 4	D	264	274	anti-parallel
Strand 5	D	185	196	anti-parallel
Strand 6	D	177	182	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	79	81	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	156	first strand
Strand 2	D	203	206	parallel
Strand 3	D	222	227	anti-parallel
Strand 4	D	279	282	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	362	first strand
Strand 2	D	368	369	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	497	first strand
Strand 2	D	500	501	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EB0