Analysis of interatomic Contacts of Structural Units in PDB entry:
6EB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EB3 entry

There are 4 chains in PDB entry 6EB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 268
B
 MET 1VAL 268
C
 MET 1VAL 268
D
 MET 1VAL 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6EB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
36 45Right-handed alpha
Helix 3
AA3
A
68 83Right-handed alpha
Helix 4
AA4
A
94 107Right-handed alpha
Helix 5
AA5
A
144 157Right-handed alpha
Helix 6
AA6
A
158 165Right-handed alpha
Helix 7
AA7
A
165 172Right-handed alpha
Helix 8
AA8
A
172 178Right-handed alpha
Helix 9
AA9
A
182 193Right-handed alpha
Helix 10
AB1
A
194 196Right-handed 310
Helix 11
AB2
A
198 205Right-handed 310
Helix 12
AB3
A
222 232Right-handed alpha
Helix 13
AB4
A
246 251Right-handed alpha
Helix 14
AB5
A
251 265Right-handed alpha
Helix 15
AB6
B
31 35Right-handed 310
Helix 16
AB7
B
36 45Right-handed alpha
Helix 17
AB8
B
68 83Right-handed alpha
Helix 18
AB9
B
94 107Right-handed alpha
Helix 19
AC1
B
130 140Right-handed alpha
Helix 20
AC2
B
141 143Right-handed 310
Helix 21
AC3
B
144 157Right-handed alpha
Helix 22
AC4
B
158 165Right-handed alpha
Helix 23
AC5
B
165 172Right-handed alpha
Helix 24
AC6
B
172 178Right-handed alpha
Helix 25
AC7
B
182 193Right-handed alpha
Helix 26
AC8
B
194 196Right-handed 310
Helix 27
AC9
B
198 205Right-handed 310
Helix 28
AD1
B
222 232Right-handed alpha
Helix 29
AD2
B
246 251Right-handed alpha
Helix 30
AD3
B
251 265Right-handed alpha
Helix 31
AD4
C
31 35Right-handed 310
Helix 32
AD5
C
36 45Right-handed alpha
Helix 33
AD6
C
68 83Right-handed alpha
Helix 34
AD7
C
94 107Right-handed alpha
Helix 35
AD8
C
130 136Right-handed alpha
Helix 36
AD9
C
145 157Right-handed alpha
Helix 37
AE1
C
158 165Right-handed alpha
Helix 38
AE2
C
165 172Right-handed alpha
Helix 39
AE3
C
172 178Right-handed alpha
Helix 40
AE4
C
182 193Right-handed alpha
Helix 41
AE5
C
198 205Right-handed 310
Helix 42
AE6
C
222 232Right-handed alpha
Helix 43
AE7
C
246 251Right-handed alpha
Helix 44
AE8
C
251 265Right-handed alpha
Helix 45
AE9
D
31 35Right-handed 310
Helix 46
AF1
D
36 45Right-handed alpha
Helix 47
AF2
D
68 83Right-handed alpha
Helix 48
AF3
D
94 107Right-handed alpha
Helix 49
AF4
D
130 140Right-handed alpha
Helix 50
AF5
D
141 143Right-handed 310
Helix 51
AF6
D
144 157Right-handed alpha
Helix 52
AF7
D
158 165Right-handed alpha
Helix 53
AF8
D
165 172Right-handed alpha
Helix 54
AF9
D
172 178Right-handed alpha
Helix 55
AG1
D
182 193Right-handed alpha
Helix 56
AG2
D
198 205Right-handed 310
Helix 57
AG3
D
222 232Right-handed alpha
Helix 58
AG4
D
246 251Right-handed alpha
Helix 59
AG5
D
251 265Right-handed alpha
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There are 4 sheets in PDB entry 6EB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
9 16anti-parallel
Strand 3
A
47 52anti-parallel
Strand 4
A
20 25parallel
Strand 5
A
88 93parallel
Strand 6
A
111 117parallel
Strand 7
A
209 214parallel
Strand 8
A
236 240parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
9 16anti-parallel
Strand 3
B
47 52anti-parallel
Strand 4
B
20 25parallel
Strand 5
B
88 93parallel
Strand 6
B
111 117parallel
Strand 7
B
209 214parallel
Strand 8
B
236 240parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
9 16anti-parallel
Strand 3
C
47 52anti-parallel
Strand 4
C
20 25parallel
Strand 5
C
88 93parallel
Strand 6
C
111 117parallel
Strand 7
C
209 214parallel
Strand 8
C
236 240parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
9 16anti-parallel
Strand 3
D
47 52anti-parallel
Strand 4
D
20 25parallel
Strand 5
D
88 93parallel
Strand 6
D
111 117parallel
Strand 7
D
209 214parallel
Strand 8
D
236 240parallel
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