Analysis of interatomic Contacts of Structural Units in PDB entry:
6EBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EBC entry

There are 4 chains in PDB entry 6EBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 141
B
 SER -1ALA 141
C
 SER 2ALA 141
D
 HIS 0ALA 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6EBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
48 72Right-handed alpha
Helix 3
AA3
A
109 124Right-handed alpha
Helix 4
AA4
A
124 131Right-handed alpha
Helix 5
AA5
B
36 40Right-handed 310
Helix 6
AA6
B
48 72Right-handed alpha
Helix 7
AA7
B
109 124Right-handed alpha
Helix 8
AA8
B
124 131Right-handed alpha
Helix 9
AA9
C
36 40Right-handed 310
Helix 10
AB1
C
48 72Right-handed alpha
Helix 11
AB2
C
109 124Right-handed alpha
Helix 12
AB3
C
124 131Right-handed alpha
Helix 13
AB4
D
36 40Right-handed 310
Helix 14
AB5
D
48 72Right-handed alpha
Helix 15
AB6
D
109 124Right-handed alpha
Helix 16
AB7
D
124 131Right-handed alpha
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There are 4 sheets in PDB entry 6EBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
21 24anti-parallel
Strand 3
A
6 15anti-parallel
Strand 4
C
81 91anti-parallel
Strand 5
C
94 104anti-parallel
Strand 6
C
136 140parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
94 104parallel
Strand 3
A
81 91anti-parallel
Strand 4
C
6 15anti-parallel
Strand 5
C
21 24anti-parallel
Strand 6
C
30 32anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
21 24anti-parallel
Strand 3
B
6 15anti-parallel
Strand 4
D
81 91anti-parallel
Strand 5
D
94 104anti-parallel
Strand 6
D
136 140parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 140first strand
Strand 2
B
94 104parallel
Strand 3
B
81 91anti-parallel
Strand 4
D
6 15anti-parallel
Strand 5
D
21 24anti-parallel
Strand 6
D
30 32anti-parallel
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