Analysis of interatomic Contacts of Structural Units in PDB entry:
6EBK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EBK entry

There are 8 chains in PDB entry 6EBK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 37	SER 361
B	CYS 31	THR 417
C	GLN 37	SER 361
D	CYS 31	THR 417
E	GLN 37	SER 361
F	CYS 31	THR 417
G	GLN 37	SER 361
H	CYS 31	THR 417

There are144 helices in PDB entry 6EBK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	78	Right-handed alpha
Helix 2	AA2	A	89	92	Right-handed 310
Helix 3	AA3	A	93	107	Right-handed alpha
Helix 4	AA4	A	109	113	Right-handed 310
Helix 5	AA5	A	125	129	Right-handed 310
Helix 6	AA6	A	132	147	Right-handed alpha
Helix 7	AA7	A	165	179	Right-handed alpha
Helix 8	AA8	A	191	205	Right-handed alpha
Helix 9	AA9	A	222	227	Right-handed alpha
Helix 10	AB1	A	227	236	Right-handed alpha
Helix 11	AB2	A	253	258	Right-handed 310
Helix 12	AB3	A	263	267	Right-handed 310
Helix 13	AB4	A	270	279	Right-handed alpha
Helix 14	AB5	A	279	299	Right-handed alpha
Helix 15	AB6	A	302	310	Right-handed alpha
Helix 16	AB7	A	326	335	Right-handed alpha
Helix 17	AB8	A	344	356	Right-handed alpha
Helix 18	AB9	B	48	52	Right-handed alpha
Helix 19	AC1	B	64	67	Right-handed 310
Helix 20	AC2	B	84	95	Right-handed alpha
Helix 21	AC3	B	105	114	Right-handed alpha
Helix 22	AC4	B	120	131	Right-handed alpha
Helix 23	AC5	B	145	153	Right-handed alpha
Helix 24	AC6	B	159	184	Right-handed alpha
Helix 25	AC7	B	203	210	Right-handed alpha
Helix 26	AC8	B	220	243	Right-handed alpha
Helix 27	AC9	B	247	252	Right-handed 310
Helix 28	AD1	B	253	276	Right-handed alpha
Helix 29	AD2	B	286	296	Right-handed alpha
Helix 30	AD3	B	297	306	Right-handed 310
Helix 31	AD4	B	307	319	Right-handed alpha
Helix 32	AD5	B	323	346	Right-handed alpha
Helix 33	AD6	B	359	369	Right-handed alpha
Helix 34	AD7	B	380	399	Right-handed alpha
Helix 35	AD8	B	401	414	Right-handed alpha
Helix 36	AD9	B	415	417	Right-handed 310
Helix 37	AE1	C	65	78	Right-handed alpha
Helix 38	AE2	C	89	92	Right-handed 310
Helix 39	AE3	C	93	107	Right-handed alpha
Helix 40	AE4	C	109	113	Right-handed 310
Helix 41	AE5	C	125	129	Right-handed 310
Helix 42	AE6	C	132	147	Right-handed alpha
Helix 43	AE7	C	165	179	Right-handed alpha
Helix 44	AE8	C	191	205	Right-handed alpha
Helix 45	AE9	C	222	227	Right-handed alpha
Helix 46	AF1	C	227	236	Right-handed alpha
Helix 47	AF2	C	253	258	Right-handed 310
Helix 48	AF3	C	263	267	Right-handed 310
Helix 49	AF4	C	270	279	Right-handed alpha
Helix 50	AF5	C	279	299	Right-handed alpha
Helix 51	AF6	C	302	310	Right-handed alpha
Helix 52	AF7	C	326	335	Right-handed alpha
Helix 53	AF8	C	344	356	Right-handed alpha
Helix 54	AF9	D	48	52	Right-handed alpha
Helix 55	AG1	D	64	67	Right-handed 310
Helix 56	AG2	D	84	95	Right-handed alpha
Helix 57	AG3	D	105	114	Right-handed alpha
Helix 58	AG4	D	120	131	Right-handed alpha
Helix 59	AG5	D	145	153	Right-handed alpha
Helix 60	AG6	D	159	184	Right-handed alpha
Helix 61	AG7	D	203	210	Right-handed alpha
Helix 62	AG8	D	220	243	Right-handed alpha
Helix 63	AG9	D	247	252	Right-handed 310
Helix 64	AH1	D	253	276	Right-handed alpha
Helix 65	AH2	D	286	296	Right-handed alpha
Helix 66	AH3	D	297	306	Right-handed 310
Helix 67	AH4	D	307	319	Right-handed alpha
Helix 68	AH5	D	323	346	Right-handed alpha
Helix 69	AH6	D	359	369	Right-handed alpha
Helix 70	AH7	D	380	399	Right-handed alpha
Helix 71	AH8	D	401	414	Right-handed alpha
Helix 72	AH9	D	415	417	Right-handed 310
Helix 73	AI1	E	65	78	Right-handed alpha
Helix 74	AI2	E	89	92	Right-handed 310
Helix 75	AI3	E	93	107	Right-handed alpha
Helix 76	AI4	E	109	113	Right-handed 310
Helix 77	AI5	E	125	129	Right-handed 310
Helix 78	AI6	E	132	147	Right-handed alpha
Helix 79	AI7	E	165	179	Right-handed alpha
Helix 80	AI8	E	191	205	Right-handed alpha
Helix 81	AI9	E	222	227	Right-handed alpha
Helix 82	AJ1	E	227	236	Right-handed alpha
Helix 83	AJ2	E	253	258	Right-handed 310
Helix 84	AJ3	E	263	267	Right-handed 310
Helix 85	AJ4	E	270	279	Right-handed alpha
Helix 86	AJ5	E	279	299	Right-handed alpha
Helix 87	AJ6	E	302	310	Right-handed alpha
Helix 88	AJ7	E	326	335	Right-handed alpha
Helix 89	AJ8	E	344	356	Right-handed alpha
Helix 90	AJ9	F	48	52	Right-handed alpha
Helix 91	AK1	F	64	67	Right-handed 310
Helix 92	AK2	F	84	95	Right-handed alpha
Helix 93	AK3	F	105	114	Right-handed alpha
Helix 94	AK4	F	120	131	Right-handed alpha
Helix 95	AK5	F	145	153	Right-handed alpha
Helix 96	AK6	F	159	184	Right-handed alpha
Helix 97	AK7	F	203	210	Right-handed alpha
Helix 98	AK8	F	220	243	Right-handed alpha
Helix 99	AK9	F	247	252	Right-handed 310
Helix 100	AL1	F	253	275	Right-handed alpha
Helix 101	AL2	F	286	296	Right-handed alpha
Helix 102	AL3	F	297	306	Right-handed 310
Helix 103	AL4	F	307	319	Right-handed alpha
Helix 104	AL5	F	322	346	Right-handed alpha
Helix 105	AL6	F	359	369	Right-handed alpha
Helix 106	AL7	F	380	399	Right-handed alpha
Helix 107	AL8	F	401	414	Right-handed alpha
Helix 108	AL9	F	415	417	Right-handed 310
Helix 109	AM1	G	65	78	Right-handed alpha
Helix 110	AM2	G	89	92	Right-handed 310
Helix 111	AM3	G	93	106	Right-handed alpha
Helix 112	AM4	G	109	113	Right-handed 310
Helix 113	AM5	G	125	129	Right-handed 310
Helix 114	AM6	G	132	147	Right-handed alpha
Helix 115	AM7	G	165	179	Right-handed alpha
Helix 116	AM8	G	191	205	Right-handed alpha
Helix 117	AM9	G	222	227	Right-handed alpha
Helix 118	AN1	G	227	236	Right-handed alpha
Helix 119	AN2	G	253	258	Right-handed 310
Helix 120	AN3	G	263	267	Right-handed 310
Helix 121	AN4	G	270	279	Right-handed alpha
Helix 122	AN5	G	279	299	Right-handed alpha
Helix 123	AN6	G	302	310	Right-handed alpha
Helix 124	AN7	G	326	335	Right-handed alpha
Helix 125	AN8	G	344	356	Right-handed alpha
Helix 126	AN9	H	48	52	Right-handed alpha
Helix 127	AO1	H	64	67	Right-handed 310
Helix 128	AO2	H	84	95	Right-handed alpha
Helix 129	AO3	H	105	114	Right-handed alpha
Helix 130	AO4	H	120	131	Right-handed alpha
Helix 131	AO5	H	145	153	Right-handed alpha
Helix 132	AO6	H	159	184	Right-handed alpha
Helix 133	AO7	H	203	210	Right-handed alpha
Helix 134	AO8	H	220	243	Right-handed alpha
Helix 135	AO9	H	247	252	Right-handed 310
Helix 136	AP1	H	253	276	Right-handed alpha
Helix 137	AP2	H	286	296	Right-handed alpha
Helix 138	AP3	H	297	306	Right-handed 310
Helix 139	AP4	H	307	319	Right-handed alpha
Helix 140	AP5	H	323	346	Right-handed alpha
Helix 141	AP6	H	359	369	Right-handed alpha
Helix 142	AP7	H	380	399	Right-handed alpha
Helix 143	AP8	H	401	414	Right-handed alpha
Helix 144	AP9	H	415	417	Right-handed 310

There are 12 sheets in PDB entry 6EBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	48	50	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	182	188	parallel
Strand 3	A	152	157	parallel
Strand 4	A	114	119	parallel
Strand 5	A	83	85	parallel
Strand 6	A	52	55	parallel
Strand 7	A	317	322	parallel
Strand 8	A	240	243	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	47	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	75	78	parallel
Strand 4	B	69	70	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	48	50	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	182	188	parallel
Strand 3	C	152	157	parallel
Strand 4	C	114	118	parallel
Strand 5	C	83	85	parallel
Strand 6	C	52	55	parallel
Strand 7	C	317	322	parallel
Strand 8	C	240	243	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	47	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	75	78	parallel
Strand 4	D	69	70	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	48	50	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	214	first strand
Strand 2	E	182	188	parallel
Strand 3	E	152	157	parallel
Strand 4	E	114	118	parallel
Strand 5	E	83	85	parallel
Strand 6	E	52	55	parallel
Strand 7	E	317	322	parallel
Strand 8	E	240	243	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	47	first strand
Strand 2	F	34	39	anti-parallel
Strand 3	F	75	78	parallel
Strand 4	F	69	70	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	48	50	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	212	214	first strand
Strand 2	G	182	188	parallel
Strand 3	G	152	157	parallel
Strand 4	G	114	118	parallel
Strand 5	G	83	85	parallel
Strand 6	G	52	55	parallel
Strand 7	G	317	322	parallel
Strand 8	G	240	243	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	47	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	75	78	parallel
Strand 4	H	69	70	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EBK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EBK