Analysis of interatomic Contacts of Structural Units in PDB entry:
6EBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EBN entry

There are 3 chains in PDB entry 6EBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14HIS 442
A
 ALA 444ALA 980
B
 VAL 14ILE 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 6EBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 25Right-handed alpha
Helix 2
AA2
A
34 56Right-handed alpha
Helix 3
AA3
A
65 70Right-handed alpha
Helix 4
AA4
A
71 96Right-handed alpha
Helix 5
AA5
A
113 125Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
138 154Right-handed alpha
Helix 8
AA8
A
174 200Right-handed alpha
Helix 9
AA9
A
206 210Right-handed 310
Helix 10
AB1
A
226 228Right-handed 310
Helix 11
AB2
A
229 234Right-handed alpha
Helix 12
AB3
A
237 243Right-handed alpha
Helix 13
AB4
A
243 253Right-handed alpha
Helix 14
AB5
A
255 265Right-handed alpha
Helix 15
AB6
A
267 272Right-handed alpha
Helix 16
AB7
A
272 280Right-handed alpha
Helix 17
AB8
A
296 305Right-handed alpha
Helix 18
AB9
A
308 310Right-handed 310
Helix 19
AC1
A
324 338Right-handed alpha
Helix 20
AC2
A
359 372Right-handed alpha
Helix 21
AC3
A
386 393Right-handed 310
Helix 22
AC4
A
421 429Right-handed alpha
Helix 23
AC5
A
430 434Right-handed 310
Helix 24
AC6
A
458 466Right-handed 310
Helix 25
AC7
A
491 506Right-handed alpha
Helix 26
AC8
A
511 533Right-handed alpha
Helix 27
AC9
A
548 552Right-handed 310
Helix 28
AD1
A
557 572Right-handed alpha
Helix 29
AD2
A
576 582Right-handed alpha
Helix 30
AD3
A
583 591Right-handed alpha
Helix 31
AD4
A
616 631Right-handed alpha
Helix 32
AD5
A
639 643Right-handed 310
Helix 33
AD6
A
653 669Right-handed alpha
Helix 34
AD7
A
689 691Right-handed 310
Helix 35
AD8
A
692 716Right-handed alpha
Helix 36
AD9
A
744 747Right-handed 310
Helix 37
AE1
A
783 787Right-handed 310
Helix 38
AE2
A
822 826Right-handed 310
Helix 39
AE3
A
873 880Right-handed alpha
Helix 40
AE4
A
889 894Right-handed alpha
Helix 41
AE5
A
898 902Right-handed 310
Helix 42
AE6
A
937 941Right-handed 310
Helix 43
AE7
A
963 967Right-handed 310
Helix 44
AE8
A
969 976Right-handed alpha
Helix 45
AE9
B
17 25Right-handed alpha
Helix 46
AF1
B
34 56Right-handed alpha
Helix 47
AF2
B
65 70Right-handed alpha
Helix 48
AF3
B
71 96Right-handed alpha
Helix 49
AF4
B
113 125Right-handed alpha
Helix 50
AF5
B
132 136Right-handed 310
Helix 51
AF6
B
138 155Right-handed alpha
Helix 52
AF7
B
174 200Right-handed alpha
Helix 53
AF8
B
206 210Right-handed 310
Helix 54
AF9
B
226 228Right-handed 310
Helix 55
AG1
B
229 234Right-handed alpha
Helix 56
AG2
B
237 243Right-handed alpha
Helix 57
AG3
B
243 253Right-handed alpha
Helix 58
AG4
B
255 264Right-handed alpha
Helix 59
AG5
B
267 272Right-handed alpha
Helix 60
AG6
B
272 281Right-handed alpha
Helix 61
AG7
B
296 305Right-handed alpha
Helix 62
AG8
B
308 310Right-handed 310
Helix 63
AG9
B
324 339Right-handed alpha
Helix 64
AH1
B
359 372Right-handed alpha
Helix 65
AH2
B
386 393Right-handed 310
Helix 66
AH3
B
421 431Right-handed alpha
Helix 67
AH4
B
432 434Right-handed 310
Helix 68
AH5
B
458 466Right-handed 310
Helix 69
AH6
B
491 506Right-handed alpha
Helix 70
AH7
B
511 533Right-handed alpha
Helix 71
AH8
B
548 552Right-handed 310
Helix 72
AH9
B
557 572Right-handed alpha
Helix 73
AI1
B
576 582Right-handed alpha
Helix 74
AI2
B
583 591Right-handed alpha
Helix 75
AI3
B
616 631Right-handed alpha
Helix 76
AI4
B
639 643Right-handed 310
Helix 77
AI5
B
653 669Right-handed alpha
Helix 78
AI6
B
689 691Right-handed 310
Helix 79
AI7
B
692 716Right-handed alpha
Helix 80
AI8
B
744 747Right-handed 310
Helix 81
AI9
B
783 787Right-handed 310
Helix 82
AJ1
B
822 826Right-handed 310
Helix 83
AJ2
B
873 880Right-handed alpha
Helix 84
AJ3
B
889 894Right-handed alpha
Helix 85
AJ4
B
898 902Right-handed 310
Helix 86
AJ5
B
937 941Right-handed 310
Helix 87
AJ6
B
963 967Right-handed 310
Helix 88
AJ7
B
969 976Right-handed alpha
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There are 10 sheets in PDB entry 6EBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
452 456anti-parallel
Strand 3
A
436 439anti-parallel
Strand 4
A
378 382parallel
Strand 5
A
342 348parallel
Strand 6
A
287 291parallel
Strand 7
A
312 315parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
222 224anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 544first strand
Strand 2
A
599 606anti-parallel
Strand 3
A
676 682anti-parallel
Strand 4
A
648 652anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
928 929first strand
Strand 2
A
806 820parallel
Strand 3
A
793 799anti-parallel
Strand 4
A
774 778anti-parallel
Strand 5
A
724 730anti-parallel
Strand 6
A
733 738anti-parallel
Strand 7
A
749 758anti-parallel
Strand 8
A
806 820anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
834 841first strand
Strand 2
A
844 849anti-parallel
Strand 3
A
858 868anti-parallel
Strand 4
A
943 958anti-parallel
Strand 5
A
915 921anti-parallel
Strand 6
A
881 885anti-parallel
Strand 7
A
834 841anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 172first strand
Strand 2
B
452 456anti-parallel
Strand 3
B
436 439anti-parallel
Strand 4
B
378 382parallel
Strand 5
B
342 348parallel
Strand 6
B
287 291parallel
Strand 7
B
312 315parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
222 224anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
540 544first strand
Strand 2
B
599 606anti-parallel
Strand 3
B
676 682anti-parallel
Strand 4
B
648 652anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
928 929first strand
Strand 2
B
806 820parallel
Strand 3
B
793 799anti-parallel
Strand 4
B
774 778anti-parallel
Strand 5
B
724 730anti-parallel
Strand 6
B
733 738anti-parallel
Strand 7
B
749 759anti-parallel
Strand 8
B
806 820anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
834 841first strand
Strand 2
B
844 849anti-parallel
Strand 3
B
858 868anti-parallel
Strand 4
B
945 958anti-parallel
Strand 5
B
915 922anti-parallel
Strand 6
B
881 885anti-parallel
Strand 7
B
834 841anti-parallel
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