Analysis of interatomic Contacts of Structural Units in PDB entry:
6EBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EBT entry

There are 2 chains in PDB entry 6EBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49LYS 510
B
 SER 49LYS 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6EBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 79Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
89 108Right-handed alpha
Helix 4
AA4
A
109 111Right-handed 310
Helix 5
AA5
A
113 129Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
146 165Right-handed alpha
Helix 8
AA8
A
186 206Right-handed alpha
Helix 9
AA9
A
206 225Right-handed alpha
Helix 10
AB1
A
244 265Right-handed alpha
Helix 11
AB2
A
288 302Right-handed alpha
Helix 12
AB3
A
310 317Right-handed alpha
Helix 13
AB4
A
318 346Right-handed alpha
Helix 14
AB5
A
374 400Right-handed alpha
Helix 15
AB6
A
408 433Right-handed alpha
Helix 16
AB7
A
434 438Right-handed 310
Helix 17
AB8
A
441 452Right-handed alpha
Helix 18
AB9
A
453 458Right-handed 310
Helix 19
AC1
A
459 464Right-handed alpha
Helix 20
AC2
A
464 479Right-handed alpha
Helix 21
AC3
A
481 489Right-handed alpha
Helix 22
AC4
A
493 501Right-handed alpha
Helix 23
AC5
A
502 506Right-handed 310
Helix 24
AC6
B
69 79Right-handed alpha
Helix 25
AC7
B
83 87Right-handed 310
Helix 26
AC8
B
89 108Right-handed alpha
Helix 27
AC9
B
109 111Right-handed 310
Helix 28
AD1
B
113 129Right-handed alpha
Helix 29
AD2
B
132 136Right-handed 310
Helix 30
AD3
B
146 165Right-handed alpha
Helix 31
AD4
B
189 206Right-handed alpha
Helix 32
AD5
B
206 225Right-handed alpha
Helix 33
AD6
B
244 265Right-handed alpha
Helix 34
AD7
B
288 302Right-handed alpha
Helix 35
AD8
B
310 317Right-handed alpha
Helix 36
AD9
B
318 346Right-handed alpha
Helix 37
AE1
B
374 400Right-handed alpha
Helix 38
AE2
B
408 434Right-handed alpha
Helix 39
AE3
B
435 438Right-handed 310
Helix 40
AE4
B
441 452Right-handed alpha
Helix 41
AE5
B
453 458Right-handed 310
Helix 42
AE6
B
459 464Right-handed alpha
Helix 43
AE7
B
464 479Right-handed alpha
Helix 44
AE8
B
481 489Right-handed alpha
Helix 45
AE9
B
493 501Right-handed alpha
Helix 46
AF1
B
502 506Right-handed 310
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There are 8 sheets in PDB entry 6EBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
58 63anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 234first strand
Strand 2
A
237 243anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
306 307parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
439 440anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
58 63anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
237 243anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
306 307parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 357first strand
Strand 2
B
439 440anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il