Analysis of interatomic Contacts of Structural Units in PDB entry:
6EBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EBV entry

There are 4 chains in PDB entry 6EBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 266
B	MET 1	GLU 266
C	MET 1	LYS 267
D	MET 1	LEU 265

There are 49 helices in PDB entry 6EBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	53	61	Right-handed alpha
Helix 3	AA3	A	69	85	Right-handed alpha
Helix 4	AA4	A	120	133	Right-handed alpha
Helix 5	AA5	A	136	146	Right-handed alpha
Helix 6	AA6	A	156	161	Right-handed alpha
Helix 7	AA7	A	178	182	Right-handed 310
Helix 8	AA8	A	188	215	Right-handed alpha
Helix 9	AA9	A	224	228	Right-handed 310
Helix 10	AB1	A	230	244	Right-handed alpha
Helix 11	AB2	A	253	255	Right-handed 310
Helix 12	AB3	A	256	264	Right-handed alpha
Helix 13	AB4	B	28	30	Right-handed 310
Helix 14	AB5	B	31	41	Right-handed alpha
Helix 15	AB6	B	53	61	Right-handed alpha
Helix 16	AB7	B	69	85	Right-handed alpha
Helix 17	AB8	B	120	133	Right-handed alpha
Helix 18	AB9	B	136	146	Right-handed alpha
Helix 19	AC1	B	156	161	Right-handed alpha
Helix 20	AC2	B	176	182	Right-handed 310
Helix 21	AC3	B	188	215	Right-handed alpha
Helix 22	AC4	B	224	228	Right-handed 310
Helix 23	AC5	B	230	244	Right-handed alpha
Helix 24	AC6	B	253	255	Right-handed 310
Helix 25	AC7	B	256	264	Right-handed alpha
Helix 26	AC8	C	31	41	Right-handed alpha
Helix 27	AC9	C	53	61	Right-handed alpha
Helix 28	AD1	C	69	85	Right-handed alpha
Helix 29	AD2	C	120	133	Right-handed alpha
Helix 30	AD3	C	136	145	Right-handed alpha
Helix 31	AD4	C	156	161	Right-handed alpha
Helix 32	AD5	C	178	182	Right-handed 310
Helix 33	AD6	C	188	215	Right-handed alpha
Helix 34	AD7	C	224	228	Right-handed 310
Helix 35	AD8	C	230	244	Right-handed alpha
Helix 36	AD9	C	253	255	Right-handed 310
Helix 37	AE1	C	256	267	Right-handed alpha
Helix 38	AE2	D	31	40	Right-handed alpha
Helix 39	AE3	D	53	61	Right-handed alpha
Helix 40	AE4	D	69	85	Right-handed alpha
Helix 41	AE5	D	120	133	Right-handed alpha
Helix 42	AE6	D	136	145	Right-handed alpha
Helix 43	AE7	D	156	161	Right-handed alpha
Helix 44	AE8	D	178	182	Right-handed 310
Helix 45	AE9	D	188	215	Right-handed alpha
Helix 46	AF1	D	224	228	Right-handed 310
Helix 47	AF2	D	230	244	Right-handed alpha
Helix 48	AF3	D	253	255	Right-handed 310
Helix 49	AF4	D	256	264	Right-handed alpha

There are 11 sheets in PDB entry 6EBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	46	50	parallel
Strand 3	A	2	7	parallel
Strand 4	A	11	18	anti-parallel
Strand 5	A	21	28	anti-parallel
Strand 6	B	22	25	anti-parallel
Strand 7	B	12	17	anti-parallel
Strand 8	B	2	7	anti-parallel
Strand 9	B	46	50	parallel
Strand 10	B	66	67	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	117	first strand
Strand 2	A	101	106	anti-parallel
Strand 3	A	92	97	anti-parallel
Strand 4	A	219	223	parallel
Strand 5	A	247	250	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	172	174	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	117	first strand
Strand 2	B	101	106	anti-parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	219	223	parallel
Strand 5	B	247	250	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	172	174	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	28	first strand
Strand 2	C	11	17	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	C	46	50	parallel
Strand 5	C	66	67	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	117	first strand
Strand 2	C	101	106	anti-parallel
Strand 3	C	92	97	anti-parallel
Strand 4	C	219	223	parallel
Strand 5	C	247	250	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	172	174	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	28	first strand
Strand 2	D	11	18	anti-parallel
Strand 3	D	2	7	anti-parallel
Strand 4	D	46	50	parallel
Strand 5	D	66	68	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	117	first strand
Strand 2	D	101	106	anti-parallel
Strand 3	D	92	97	anti-parallel
Strand 4	D	219	223	parallel
Strand 5	D	247	250	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	172	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EBV