Analysis of interatomic Contacts of Structural Units in PDB entry:
6ECV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ECV entry

There are 2 chains in PDB entry 6ECV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 978GLU 1265
A
 GLU 980GLU 1265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 6ECV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
979 984Right-handed 310
Helix 2
AA2
B
996 1002Right-handed alpha
Helix 3
AA3
B
1007 1027Right-handed alpha
Helix 4
AA4
B
1028 1029Right-handed 310
Helix 5
AA5
B
1030 1034Right-handed 310
Helix 6
AA6
B
1045 1055Right-handed alpha
Helix 7
AA7
B
1066 1080Right-handed alpha
Helix 8
AA8
B
1111 1115Right-handed 310
Helix 9
AA9
B
1117 1128Right-handed alpha
Helix 10
AB1
B
1159 1170Right-handed alpha
Helix 11
AB2
B
1180 1189Right-handed alpha
Helix 12
AB3
B
1192 1204Right-handed alpha
Helix 13
AB4
B
1207 1226Right-handed alpha
Helix 14
AB5
B
1243 1257Right-handed alpha
Helix 15
AB6
B
1262 1264Right-handed 310
Helix 16
AB7
A
980 984Right-handed 310
Helix 17
AB8
A
996 1002Right-handed alpha
Helix 18
AB9
A
1007 1027Right-handed alpha
Helix 19
AC1
A
1028 1029Right-handed 310
Helix 20
AC2
A
1030 1034Right-handed 310
Helix 21
AC3
A
1045 1055Right-handed alpha
Helix 22
AC4
A
1066 1079Right-handed alpha
Helix 23
AC5
A
1111 1115Right-handed 310
Helix 24
AC6
A
1117 1128Right-handed alpha
Helix 25
AC7
A
1144 1149Right-handed 310
Helix 26
AC8
A
1159 1169Right-handed alpha
Helix 27
AC9
A
1180 1189Right-handed alpha
Helix 28
AD1
A
1192 1204Right-handed alpha
Helix 29
AD2
A
1207 1227Right-handed alpha
Helix 30
AD3
A
1243 1257Right-handed alpha
Helix 31
AD4
A
1262 1264Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6ECV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1086 1090first strand
Strand 2
B
1059 1064parallel
Strand 3
B
1036 1039parallel
Strand 4
B
1103 1109parallel
Strand 5
B
1129 1142parallel
Strand 6
B
1229 1238anti-parallel
Strand 7
B
1172 1179anti-parallel
Strand 8
B
1259 1260parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1086 1090first strand
Strand 2
A
1059 1064parallel
Strand 3
A
1036 1039parallel
Strand 4
A
1103 1109parallel
Strand 5
A
1129 1142parallel
Strand 6
A
1229 1238anti-parallel
Strand 7
A
1172 1179anti-parallel
Strand 8
A
1259 1260parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il