Analysis of interatomic Contacts of Structural Units in PDB entry:
6ED2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ED2 entry

There is 1 chain in PDB entry 6ED2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ARG 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6ED2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed alpha
Helix 2
AA2
A
58 61Right-handed 310
Helix 3
AA3
A
63 68Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
313 328Right-handed alpha
Helix 6
AA6
A
340 351Right-handed alpha
Helix 7
AA7
A
382 386Right-handed 310
Helix 8
AA8
A
388 408Right-handed alpha
Helix 9
AA9
A
428 444Right-handed alpha
Helix 10
AB1
A
465 469Right-handed 310
Helix 11
AB2
A
487 506Right-handed alpha
Helix 12
AB3
A
533 551Right-handed alpha
Helix 13
AB4
A
589 602Right-handed alpha
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There are 8 sheets in PDB entry 6ED2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
89 94anti-parallel
Strand 4
A
120 123anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
24 31anti-parallel
Strand 3
A
72 81anti-parallel
Strand 4
A
132 141anti-parallel
Strand 5
A
100 105anti-parallel
Strand 6
A
108 114anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
175 176anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
162 166anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 199first strand
Strand 2
A
203 212anti-parallel
Strand 3
A
236 242anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 233first strand
Strand 2
A
218 224anti-parallel
Strand 3
A
255 263anti-parallel
Strand 4
A
266 275anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
286 289anti-parallel
Strand 3
A
292 293anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 300first strand
Strand 2
A
331 333parallel
Strand 3
A
353 357parallel
Strand 4
A
413 420parallel
Strand 5
A
450 454parallel
Strand 6
A
472 475parallel
Strand 7
A
511 515parallel
Strand 8
A
554 560parallel
Strand 9
A
296 300parallel
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