Analysis of interatomic Contacts of Structural Units in PDB entry:
6ED7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ED7 entry

There are 8 chains in PDB entry 6ED7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLN 429
B	ALA 1	GLN 429
C	ALA 1	GLN 429
D	ALA 1	GLN 429
E	ALA 1	GLN 429
F	ALA 1	GLN 429
G	ALA 1	GLN 429
H	ALA 1	GLN 429

There are140 helices in PDB entry 6ED7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	13	Right-handed alpha
Helix 2	AA2	A	61	75	Right-handed alpha
Helix 3	AA3	A	85	99	Right-handed alpha
Helix 4	AA4	A	111	130	Right-handed alpha
Helix 5	AA5	A	148	153	Right-handed alpha
Helix 6	AA6	A	187	190	Right-handed 310
Helix 7	AA7	A	191	202	Right-handed alpha
Helix 8	AA8	A	225	239	Right-handed alpha
Helix 9	AA9	A	258	264	Right-handed 310
Helix 10	AB1	A	274	278	Right-handed 310
Helix 11	AB2	A	290	298	Right-handed alpha
Helix 12	AB3	A	313	328	Right-handed alpha
Helix 13	AB4	A	330	348	Right-handed alpha
Helix 14	AB5	A	349	353	Right-handed 310
Helix 15	AB6	A	375	386	Right-handed alpha
Helix 16	AB7	A	406	423	Right-handed alpha
Helix 17	AB8	A	424	427	Right-handed 310
Helix 18	AB9	B	2	13	Right-handed alpha
Helix 19	AC1	B	61	75	Right-handed alpha
Helix 20	AC2	B	85	99	Right-handed alpha
Helix 21	AC3	B	111	130	Right-handed alpha
Helix 22	AC4	B	148	153	Right-handed alpha
Helix 23	AC5	B	161	165	Right-handed 310
Helix 24	AC6	B	187	190	Right-handed 310
Helix 25	AC7	B	191	202	Right-handed alpha
Helix 26	AC8	B	225	239	Right-handed alpha
Helix 27	AC9	B	258	264	Right-handed 310
Helix 28	AD1	B	273	278	Right-handed 310
Helix 29	AD2	B	290	298	Right-handed alpha
Helix 30	AD3	B	313	328	Right-handed alpha
Helix 31	AD4	B	330	348	Right-handed alpha
Helix 32	AD5	B	349	353	Right-handed 310
Helix 33	AD6	B	375	386	Right-handed alpha
Helix 34	AD7	B	406	423	Right-handed alpha
Helix 35	AD8	B	424	427	Right-handed 310
Helix 36	AD9	C	2	13	Right-handed alpha
Helix 37	AE1	C	61	75	Right-handed alpha
Helix 38	AE2	C	85	99	Right-handed alpha
Helix 39	AE3	C	111	130	Right-handed alpha
Helix 40	AE4	C	148	153	Right-handed alpha
Helix 41	AE5	C	187	190	Right-handed 310
Helix 42	AE6	C	191	202	Right-handed alpha
Helix 43	AE7	C	225	239	Right-handed alpha
Helix 44	AE8	C	258	264	Right-handed 310
Helix 45	AE9	C	273	278	Right-handed 310
Helix 46	AF1	C	290	298	Right-handed alpha
Helix 47	AF2	C	313	329	Right-handed alpha
Helix 48	AF3	C	331	348	Right-handed alpha
Helix 49	AF4	C	349	353	Right-handed 310
Helix 50	AF5	C	375	386	Right-handed alpha
Helix 51	AF6	C	406	421	Right-handed alpha
Helix 52	AF7	C	422	427	Right-handed 310
Helix 53	AF8	D	2	13	Right-handed alpha
Helix 54	AF9	D	61	75	Right-handed alpha
Helix 55	AG1	D	86	99	Right-handed alpha
Helix 56	AG2	D	111	130	Right-handed alpha
Helix 57	AG3	D	148	153	Right-handed alpha
Helix 58	AG4	D	187	190	Right-handed 310
Helix 59	AG5	D	191	202	Right-handed alpha
Helix 60	AG6	D	225	239	Right-handed alpha
Helix 61	AG7	D	258	264	Right-handed 310
Helix 62	AG8	D	273	278	Right-handed 310
Helix 63	AG9	D	290	298	Right-handed alpha
Helix 64	AH1	D	313	328	Right-handed alpha
Helix 65	AH2	D	330	348	Right-handed alpha
Helix 66	AH3	D	349	353	Right-handed 310
Helix 67	AH4	D	375	386	Right-handed alpha
Helix 68	AH5	D	406	423	Right-handed alpha
Helix 69	AH6	D	424	427	Right-handed 310
Helix 70	AH7	E	2	13	Right-handed alpha
Helix 71	AH8	E	61	75	Right-handed alpha
Helix 72	AH9	E	85	99	Right-handed alpha
Helix 73	AI1	E	111	130	Right-handed alpha
Helix 74	AI2	E	148	153	Right-handed alpha
Helix 75	AI3	E	161	165	Right-handed 310
Helix 76	AI4	E	187	190	Right-handed 310
Helix 77	AI5	E	191	202	Right-handed alpha
Helix 78	AI6	E	225	239	Right-handed alpha
Helix 79	AI7	E	258	264	Right-handed 310
Helix 80	AI8	E	273	278	Right-handed 310
Helix 81	AI9	E	290	298	Right-handed alpha
Helix 82	AJ1	E	313	328	Right-handed alpha
Helix 83	AJ2	E	331	348	Right-handed alpha
Helix 84	AJ3	E	349	353	Right-handed 310
Helix 85	AJ4	E	375	386	Right-handed alpha
Helix 86	AJ5	E	406	423	Right-handed alpha
Helix 87	AJ6	E	424	427	Right-handed 310
Helix 88	AJ7	F	2	13	Right-handed alpha
Helix 89	AJ8	F	61	75	Right-handed alpha
Helix 90	AJ9	F	85	99	Right-handed alpha
Helix 91	AK1	F	111	130	Right-handed alpha
Helix 92	AK2	F	148	153	Right-handed alpha
Helix 93	AK3	F	161	165	Right-handed 310
Helix 94	AK4	F	187	190	Right-handed 310
Helix 95	AK5	F	191	202	Right-handed alpha
Helix 96	AK6	F	225	239	Right-handed alpha
Helix 97	AK7	F	258	264	Right-handed 310
Helix 98	AK8	F	273	278	Right-handed 310
Helix 99	AK9	F	290	298	Right-handed alpha
Helix 100	AL1	F	313	328	Right-handed alpha
Helix 101	AL2	F	330	348	Right-handed alpha
Helix 102	AL3	F	349	353	Right-handed 310
Helix 103	AL4	F	375	386	Right-handed alpha
Helix 104	AL5	F	406	421	Right-handed alpha
Helix 105	AL6	F	423	427	Right-handed 310
Helix 106	AL7	G	2	13	Right-handed alpha
Helix 107	AL8	G	61	75	Right-handed alpha
Helix 108	AL9	G	85	99	Right-handed alpha
Helix 109	AM1	G	111	130	Right-handed alpha
Helix 110	AM2	G	148	153	Right-handed alpha
Helix 111	AM3	G	161	165	Right-handed 310
Helix 112	AM4	G	187	189	Right-handed 310
Helix 113	AM5	G	190	202	Right-handed alpha
Helix 114	AM6	G	225	239	Right-handed alpha
Helix 115	AM7	G	258	264	Right-handed 310
Helix 116	AM8	G	274	278	Right-handed 310
Helix 117	AM9	G	290	298	Right-handed alpha
Helix 118	AN1	G	313	329	Right-handed alpha
Helix 119	AN2	G	330	348	Right-handed alpha
Helix 120	AN3	G	349	353	Right-handed 310
Helix 121	AN4	G	375	386	Right-handed alpha
Helix 122	AN5	G	406	423	Right-handed alpha
Helix 123	AN6	G	424	427	Right-handed 310
Helix 124	AN7	H	2	13	Right-handed alpha
Helix 125	AN8	H	61	75	Right-handed alpha
Helix 126	AN9	H	85	99	Right-handed alpha
Helix 127	AO1	H	111	130	Right-handed alpha
Helix 128	AO2	H	148	153	Right-handed alpha
Helix 129	AO3	H	187	189	Right-handed 310
Helix 130	AO4	H	190	202	Right-handed alpha
Helix 131	AO5	H	225	239	Right-handed alpha
Helix 132	AO6	H	258	264	Right-handed 310
Helix 133	AO7	H	273	278	Right-handed 310
Helix 134	AO8	H	290	298	Right-handed alpha
Helix 135	AO9	H	313	328	Right-handed alpha
Helix 136	AP1	H	331	348	Right-handed alpha
Helix 137	AP2	H	349	353	Right-handed 310
Helix 138	AP3	H	375	386	Right-handed alpha
Helix 139	AP4	H	406	423	Right-handed alpha
Helix 140	AP5	H	424	427	Right-handed 310

There are 32 sheets in PDB entry 6ED7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	44	47	parallel
Strand 3	A	36	39	anti-parallel
Strand 4	A	27	33	anti-parallel
Strand 5	B	83	84	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	27	33	parallel
Strand 3	B	36	39	anti-parallel
Strand 4	B	44	47	anti-parallel
Strand 5	B	388	389	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	109	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	269	272	anti-parallel
Strand 4	A	241	246	parallel
Strand 5	A	205	210	parallel
Strand 6	A	136	140	parallel
Strand 7	A	173	175	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	221	222	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	362	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	396	399	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	109	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	269	272	anti-parallel
Strand 4	B	241	245	parallel
Strand 5	B	205	210	parallel
Strand 6	B	136	140	parallel
Strand 7	B	173	175	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	221	222	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	362	first strand
Strand 2	B	365	370	anti-parallel
Strand 3	B	396	399	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	44	47	parallel
Strand 3	C	36	39	anti-parallel
Strand 4	C	27	33	anti-parallel
Strand 5	D	83	85	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	D	27	33	parallel
Strand 3	D	36	39	anti-parallel
Strand 4	D	44	47	anti-parallel
Strand 5	D	388	389	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	109	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	269	272	anti-parallel
Strand 4	C	241	245	parallel
Strand 5	C	205	210	parallel
Strand 6	C	136	140	parallel
Strand 7	C	173	175	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	221	222	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	362	first strand
Strand 2	C	365	370	anti-parallel
Strand 3	C	396	399	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	109	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	269	272	anti-parallel
Strand 4	D	241	245	parallel
Strand 5	D	205	210	parallel
Strand 6	D	136	140	parallel
Strand 7	D	173	175	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	221	222	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	362	first strand
Strand 2	D	365	370	anti-parallel
Strand 3	D	396	399	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	388	389	first strand
Strand 2	E	44	47	parallel
Strand 3	E	36	39	anti-parallel
Strand 4	E	27	33	anti-parallel
Strand 5	F	83	84	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	27	33	parallel
Strand 3	F	36	39	anti-parallel
Strand 4	F	44	47	anti-parallel
Strand 5	F	388	389	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	109	first strand
Strand 2	E	284	289	anti-parallel
Strand 3	E	269	272	anti-parallel
Strand 4	E	241	245	parallel
Strand 5	E	205	210	parallel
Strand 6	E	136	140	parallel
Strand 7	E	173	175	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	215	first strand
Strand 2	E	221	222	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	356	362	first strand
Strand 2	E	365	370	anti-parallel
Strand 3	E	396	399	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	109	first strand
Strand 2	F	284	289	anti-parallel
Strand 3	F	269	272	anti-parallel
Strand 4	F	241	245	parallel
Strand 5	F	205	210	parallel
Strand 6	F	136	140	parallel
Strand 7	F	173	175	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	215	first strand
Strand 2	F	221	222	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	356	362	first strand
Strand 2	F	365	370	anti-parallel
Strand 3	F	396	399	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	388	389	first strand
Strand 2	G	44	47	parallel
Strand 3	G	36	39	anti-parallel
Strand 4	G	27	33	anti-parallel
Strand 5	H	83	84	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	84	first strand
Strand 2	H	27	33	parallel
Strand 3	H	36	39	anti-parallel
Strand 4	H	44	47	anti-parallel
Strand 5	H	388	389	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	109	first strand
Strand 2	G	284	289	anti-parallel
Strand 3	G	269	272	anti-parallel
Strand 4	G	241	246	parallel
Strand 5	G	205	210	parallel
Strand 6	G	136	140	parallel
Strand 7	G	173	175	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	215	first strand
Strand 2	G	221	222	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	356	362	first strand
Strand 2	G	365	370	anti-parallel
Strand 3	G	396	399	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	109	first strand
Strand 2	H	284	289	anti-parallel
Strand 3	H	269	272	anti-parallel
Strand 4	H	241	245	parallel
Strand 5	H	205	210	parallel
Strand 6	H	136	140	parallel
Strand 7	H	173	175	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	214	215	first strand
Strand 2	H	221	222	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	356	362	first strand
Strand 2	H	365	370	anti-parallel
Strand 3	H	396	399	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ED7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ED7