Analysis of interatomic Contacts of Structural Units in PDB entry:
6EDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EDB entry

There are 4 chains in PDB entry 6EDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 164ASP 520
B
 LYS 6TYR 72
C
 C 1 G 21
D
 G 2 C 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6EDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 172Right-handed 310
Helix 2
AA2
A
175 197Right-handed alpha
Helix 3
AA3
A
260 266Right-handed 310
Helix 4
AA4
A
274 291Right-handed alpha
Helix 5
AA5
A
331 335Right-handed 310
Helix 6
AA6
A
345 354Right-handed alpha
Helix 7
AA7
A
379 389Right-handed alpha
Helix 8
AA8
A
405 424Right-handed alpha
Helix 9
AA9
A
434 449Right-handed alpha
Helix 10
AB1
A
452 456Right-handed 310
Helix 11
AB2
A
459 478Right-handed alpha
Helix 12
AB3
A
497 514Right-handed alpha
Helix 13
AB4
A
516 520Right-handed 310
Helix 14
AB5
B
10 25Right-handed alpha
Helix 15
AB6
B
31 44Right-handed alpha
Helix 16
AB7
B
47 64Right-handed alpha
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There are 2 sheets in PDB entry 6EDB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
317 326parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
374 378anti-parallel
Strand 6
A
248 253anti-parallel
Strand 7
A
237 241anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
317 326parallel
Strand 4
A
307 312anti-parallel
Strand 5
A
296 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il