Analysis of interatomic Contacts of Structural Units in PDB entry:
6EDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EDH entry

There are 2 chains in PDB entry 6EDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLY 283
B
 GLU 3GLY 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6EDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 43Right-handed alpha
Helix 2
AA2
A
53 63Right-handed alpha
Helix 3
AA3
A
131 137Right-handed alpha
Helix 4
AA4
A
139 147Right-handed alpha
Helix 5
AA5
A
155 158Right-handed 310
Helix 6
AA6
A
160 165Right-handed 310
Helix 7
AA7
A
167 181Right-handed alpha
Helix 8
AA8
A
214 229Right-handed alpha
Helix 9
AA9
A
230 233Right-handed 310
Helix 10
AB1
B
28 43Right-handed alpha
Helix 11
AB2
B
53 65Right-handed alpha
Helix 12
AB3
B
131 137Right-handed alpha
Helix 13
AB4
B
139 147Right-handed alpha
Helix 14
AB5
B
155 158Right-handed 310
Helix 15
AB6
B
160 164Right-handed 310
Helix 16
AB7
B
167 181Right-handed alpha
Helix 17
AB8
B
214 229Right-handed alpha
Helix 18
AB9
B
230 233Right-handed 310
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There are 8 sheets in PDB entry 6EDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
16 19anti-parallel
Strand 3
A
44 47parallel
Strand 4
A
245 249anti-parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
266 273anti-parallel
Strand 7
A
79 87anti-parallel
Strand 8
A
75 76anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
253 257anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
150 153anti-parallel
Strand 3
A
207 210anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
198 200anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
16 19anti-parallel
Strand 3
B
44 47parallel
Strand 4
B
245 249anti-parallel
Strand 5
B
109 118anti-parallel
Strand 6
B
266 274anti-parallel
Strand 7
B
79 87anti-parallel
Strand 8
B
75 76anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 238first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
253 257anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
B
150 153anti-parallel
Strand 3
B
207 210anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
198 200anti-parallel
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