Analysis of interatomic Contacts of Structural Units in PDB entry:
6EDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EDI entry

There are 2 chains in PDB entry 6EDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 398
B
 MET 1SER 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6EDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 10Right-handed 310
Helix 2
AA2
A
11 19Right-handed alpha
Helix 3
AA3
A
20 24Right-handed 310
Helix 4
AA4
A
66 68Right-handed 310
Helix 5
AA5
A
69 85Right-handed alpha
Helix 6
AA6
A
89 94Right-handed alpha
Helix 7
AA7
A
126 128Right-handed 310
Helix 8
AA8
A
143 157Right-handed alpha
Helix 9
AA9
A
159 163Right-handed alpha
Helix 10
AB1
A
172 177Right-handed alpha
Helix 11
AB2
A
220 224Right-handed 310
Helix 12
AB3
A
230 246Right-handed alpha
Helix 13
AB4
A
260 265Right-handed 310
Helix 14
AB5
A
266 279Right-handed alpha
Helix 15
AB6
A
289 300Right-handed alpha
Helix 16
AB7
A
302 328Right-handed alpha
Helix 17
AB8
A
336 342Right-handed alpha
Helix 18
AB9
A
342 348Right-handed alpha
Helix 19
AC1
A
348 360Right-handed alpha
Helix 20
AC2
A
362 369Right-handed alpha
Helix 21
AC3
A
370 374Right-handed 310
Helix 22
AC4
A
384 396Right-handed alpha
Helix 23
AC5
B
8 10Right-handed 310
Helix 24
AC6
B
11 19Right-handed alpha
Helix 25
AC7
B
20 23Right-handed 310
Helix 26
AC8
B
66 68Right-handed 310
Helix 27
AC9
B
69 85Right-handed alpha
Helix 28
AD1
B
89 95Right-handed alpha
Helix 29
AD2
B
126 128Right-handed 310
Helix 30
AD3
B
143 158Right-handed alpha
Helix 31
AD4
B
159 162Right-handed 310
Helix 32
AD5
B
172 177Right-handed alpha
Helix 33
AD6
B
220 224Right-handed 310
Helix 34
AD7
B
230 246Right-handed alpha
Helix 35
AD8
B
260 265Right-handed 310
Helix 36
AD9
B
266 279Right-handed alpha
Helix 37
AE1
B
289 300Right-handed alpha
Helix 38
AE2
B
302 328Right-handed alpha
Helix 39
AE3
B
336 342Right-handed alpha
Helix 40
AE4
B
342 347Right-handed alpha
Helix 41
AE5
B
348 360Right-handed alpha
Helix 42
AE6
B
362 369Right-handed alpha
Helix 43
AE7
B
370 374Right-handed 310
Helix 44
AE8
B
384 396Right-handed alpha
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There are 6 sheets in PDB entry 6EDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
53 61parallel
Strand 3
A
37 44anti-parallel
Strand 4
A
27 34anti-parallel
Strand 5
A
96 103parallel
Strand 6
A
138 142parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
112 113anti-parallel
Strand 3
A
123 124anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 168first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
331 334parallel
Strand 4
A
191 196parallel
Strand 5
A
200 208anti-parallel
Strand 6
A
213 219anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
53 61parallel
Strand 3
B
37 44anti-parallel
Strand 4
B
27 34anti-parallel
Strand 5
B
96 103parallel
Strand 6
B
138 142parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
112 113anti-parallel
Strand 3
B
123 124anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 168first strand
Strand 2
B
375 379anti-parallel
Strand 3
B
331 334parallel
Strand 4
B
191 195parallel
Strand 5
B
201 208anti-parallel
Strand 6
B
213 219anti-parallel
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