Analysis of interatomic Contacts of Structural Units in PDB entry:
6EDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EDM entry

There are 2 chains in PDB entry 6EDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 47
A
 ILE 49SER 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6EDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
33 38Right-handed alpha
Helix 3
AA3
A
43 46Right-handed 310
Helix 4
AA4
A
47 58Right-handed alpha
Helix 5
AA5
A
77 81Right-handed 310
Helix 6
AA6
A
85 93Right-handed alpha
Helix 7
AA7
A
94 103Right-handed alpha
Helix 8
AA8
A
106 118Right-handed alpha
Helix 9
AA9
A
130 134Right-handed 310
Helix 10
AB1
A
150 163Right-handed alpha
Helix 11
AB2
A
169 180Right-handed alpha
Helix 12
AB3
A
235 251Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6EDM.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
29 32parallel
Strand 3
A
17 23anti-parallel
Strand 4
A
219 227anti-parallel
Strand 5
A
205 216anti-parallel
Strand 6
A
190 200anti-parallel
Strand 7
A
181 182anti-parallel
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