Analysis of interatomic Contacts of Structural Units in PDB entry:
6EDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EDQ entry

There are 4 chains in PDB entry 6EDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 6CYS 237
A
 ASN 239MET 272
B
 THR 5CYS 237
B
 ASN 239LEU 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6EDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 18Right-handed alpha
Helix 2
AA2
A
18 25Right-handed alpha
Helix 3
AA3
A
29 53Right-handed alpha
Helix 4
AA4
A
58 78Right-handed alpha
Helix 5
AA5
A
92 111Right-handed alpha
Helix 6
AA6
A
122 141Right-handed alpha
Helix 7
AA7
A
145 181Right-handed alpha
Helix 8
AA8
A
183 214Right-handed alpha
Helix 9
AA9
A
222 238Right-handed alpha
Helix 10
AB1
A
238 250Right-handed alpha
Helix 11
AB2
B
12 18Right-handed alpha
Helix 12
AB3
B
18 25Right-handed alpha
Helix 13
AB4
B
29 53Right-handed alpha
Helix 14
AB5
B
58 78Right-handed alpha
Helix 15
AB6
B
92 111Right-handed alpha
Helix 16
AB7
B
122 141Right-handed alpha
Helix 17
AB8
B
145 182Right-handed alpha
Helix 18
AB9
B
183 214Right-handed alpha
Helix 19
AC1
B
222 238Right-handed alpha
Helix 20
AC2
B
238 250Right-handed alpha
Helix 21
AC3
B
272 276Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6EDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
89 91anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
89 91anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il