Analysis of interatomic Contacts of Structural Units in PDB entry:
6EDW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EDW entry

There are 8 chains in PDB entry 6EDW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 12	LYS 214
A	GLY 216	LYS 764
B	THR 12	LYS 214
B	GLY 216	LYS 764
C	THR 12	LYS 214
C	GLY 216	ILE 762
D	HIS 11	LYS 214
D	GLY 216	LYS 764

There are141 helices in PDB entry 6EDW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	31	Right-handed alpha
Helix 2	AA2	A	32	35	Right-handed 310
Helix 3	AA3	A	42	48	Right-handed alpha
Helix 4	AA4	A	57	77	Right-handed alpha
Helix 5	AA5	A	88	98	Right-handed alpha
Helix 6	AA6	A	106	114	Right-handed alpha
Helix 7	AA7	A	130	156	Right-handed alpha
Helix 8	AA8	A	158	165	Right-handed alpha
Helix 9	AA9	A	184	198	Right-handed alpha
Helix 10	AB1	A	225	243	Right-handed alpha
Helix 11	AB2	A	269	273	Right-handed 310
Helix 12	AB3	A	283	298	Right-handed alpha
Helix 13	AB4	A	304	309	Right-handed 310
Helix 14	AB5	A	312	326	Right-handed alpha
Helix 15	AB6	A	327	342	Right-handed alpha
Helix 16	AB7	A	347	367	Right-handed alpha
Helix 17	AB8	A	370	381	Right-handed alpha
Helix 18	AB9	A	392	402	Right-handed alpha
Helix 19	AC1	A	404	415	Right-handed alpha
Helix 20	AC2	A	438	450	Right-handed alpha
Helix 21	AC3	A	451	453	Right-handed 310
Helix 22	AC4	A	464	479	Right-handed alpha
Helix 23	AC5	A	494	498	Right-handed 310
Helix 24	AC6	A	500	514	Right-handed alpha
Helix 25	AC7	A	523	544	Right-handed alpha
Helix 26	AC8	A	545	558	Right-handed alpha
Helix 27	AC9	A	560	563	Right-handed 310
Helix 28	AD1	A	564	569	Right-handed alpha
Helix 29	AD2	A	570	583	Right-handed alpha
Helix 30	AD3	A	601	605	Right-handed 310
Helix 31	AD4	A	607	622	Right-handed alpha
Helix 32	AD5	A	680	684	Right-handed 310
Helix 33	AD6	A	687	701	Right-handed alpha
Helix 34	AD7	A	711	724	Right-handed alpha
Helix 35	AD8	A	743	751	Right-handed alpha
Helix 36	AD9	A	755	764	Right-handed alpha
Helix 37	AE1	B	13	31	Right-handed alpha
Helix 38	AE2	B	32	35	Right-handed 310
Helix 39	AE3	B	42	48	Right-handed alpha
Helix 40	AE4	B	57	77	Right-handed alpha
Helix 41	AE5	B	88	98	Right-handed alpha
Helix 42	AE6	B	106	114	Right-handed alpha
Helix 43	AE7	B	130	156	Right-handed alpha
Helix 44	AE8	B	158	165	Right-handed alpha
Helix 45	AE9	B	184	198	Right-handed alpha
Helix 46	AF1	B	225	243	Right-handed alpha
Helix 47	AF2	B	269	273	Right-handed 310
Helix 48	AF3	B	283	298	Right-handed alpha
Helix 49	AF4	B	304	309	Right-handed 310
Helix 50	AF5	B	312	326	Right-handed alpha
Helix 51	AF6	B	327	342	Right-handed alpha
Helix 52	AF7	B	347	367	Right-handed alpha
Helix 53	AF8	B	370	385	Right-handed alpha
Helix 54	AF9	B	392	402	Right-handed alpha
Helix 55	AG1	B	404	415	Right-handed alpha
Helix 56	AG2	B	438	450	Right-handed alpha
Helix 57	AG3	B	451	453	Right-handed 310
Helix 58	AG4	B	464	479	Right-handed alpha
Helix 59	AG5	B	494	498	Right-handed 310
Helix 60	AG6	B	500	514	Right-handed alpha
Helix 61	AG7	B	523	544	Right-handed alpha
Helix 62	AG8	B	545	558	Right-handed alpha
Helix 63	AG9	B	560	563	Right-handed 310
Helix 64	AH1	B	564	569	Right-handed alpha
Helix 65	AH2	B	570	583	Right-handed alpha
Helix 66	AH3	B	601	605	Right-handed 310
Helix 67	AH4	B	607	622	Right-handed alpha
Helix 68	AH5	B	680	684	Right-handed 310
Helix 69	AH6	B	687	701	Right-handed alpha
Helix 70	AH7	B	712	724	Right-handed alpha
Helix 71	AH8	B	743	751	Right-handed alpha
Helix 72	AH9	B	755	764	Right-handed alpha
Helix 73	AI1	C	13	31	Right-handed alpha
Helix 74	AI2	C	32	35	Right-handed 310
Helix 75	AI3	C	42	48	Right-handed alpha
Helix 76	AI4	C	57	77	Right-handed alpha
Helix 77	AI5	C	88	98	Right-handed alpha
Helix 78	AI6	C	106	114	Right-handed alpha
Helix 79	AI7	C	130	156	Right-handed alpha
Helix 80	AI8	C	158	165	Right-handed alpha
Helix 81	AI9	C	184	198	Right-handed alpha
Helix 82	AJ1	C	225	243	Right-handed alpha
Helix 83	AJ2	C	269	273	Right-handed 310
Helix 84	AJ3	C	283	298	Right-handed alpha
Helix 85	AJ4	C	304	309	Right-handed 310
Helix 86	AJ5	C	312	326	Right-handed alpha
Helix 87	AJ6	C	327	342	Right-handed alpha
Helix 88	AJ7	C	347	367	Right-handed alpha
Helix 89	AJ8	C	370	385	Right-handed alpha
Helix 90	AJ9	C	392	402	Right-handed alpha
Helix 91	AK1	C	404	415	Right-handed alpha
Helix 92	AK2	C	438	450	Right-handed alpha
Helix 93	AK3	C	451	453	Right-handed 310
Helix 94	AK4	C	464	479	Right-handed alpha
Helix 95	AK5	C	494	498	Right-handed 310
Helix 96	AK6	C	500	514	Right-handed alpha
Helix 97	AK7	C	523	544	Right-handed alpha
Helix 98	AK8	C	545	558	Right-handed alpha
Helix 99	AK9	C	560	563	Right-handed 310
Helix 100	AL1	C	564	569	Right-handed alpha
Helix 101	AL2	C	570	583	Right-handed alpha
Helix 102	AL3	C	607	618	Right-handed alpha
Helix 103	AL4	C	680	684	Right-handed 310
Helix 104	AL5	C	687	701	Right-handed alpha
Helix 105	AL6	C	711	724	Right-handed alpha
Helix 106	AL7	C	743	751	Right-handed alpha
Helix 107	AL8	C	755	762	Right-handed alpha
Helix 108	AL9	D	12	31	Right-handed alpha
Helix 109	AM1	D	32	35	Right-handed 310
Helix 110	AM2	D	42	48	Right-handed alpha
Helix 111	AM3	D	57	77	Right-handed alpha
Helix 112	AM4	D	88	98	Right-handed alpha
Helix 113	AM5	D	106	114	Right-handed alpha
Helix 114	AM6	D	130	156	Right-handed alpha
Helix 115	AM7	D	158	165	Right-handed alpha
Helix 116	AM8	D	184	198	Right-handed alpha
Helix 117	AM9	D	225	243	Right-handed alpha
Helix 118	AN1	D	269	272	Right-handed 310
Helix 119	AN2	D	283	298	Right-handed alpha
Helix 120	AN3	D	304	309	Right-handed 310
Helix 121	AN4	D	312	326	Right-handed alpha
Helix 122	AN5	D	327	342	Right-handed alpha
Helix 123	AN6	D	347	367	Right-handed alpha
Helix 124	AN7	D	371	385	Right-handed alpha
Helix 125	AN8	D	392	402	Right-handed alpha
Helix 126	AN9	D	404	415	Right-handed alpha
Helix 127	AO1	D	438	450	Right-handed alpha
Helix 128	AO2	D	451	453	Right-handed 310
Helix 129	AO3	D	464	479	Right-handed alpha
Helix 130	AO4	D	494	498	Right-handed 310
Helix 131	AO5	D	500	514	Right-handed alpha
Helix 132	AO6	D	523	544	Right-handed alpha
Helix 133	AO7	D	545	558	Right-handed alpha
Helix 134	AO8	D	560	563	Right-handed 310
Helix 135	AO9	D	564	569	Right-handed alpha
Helix 136	AP1	D	570	583	Right-handed alpha
Helix 137	AP2	D	607	622	Right-handed alpha
Helix 138	AP3	D	687	701	Right-handed alpha
Helix 139	AP4	D	711	724	Right-handed alpha
Helix 140	AP5	D	743	751	Right-handed alpha
Helix 141	AP6	D	755	764	Right-handed alpha

There are 13 sheets in PDB entry 6EDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	516	521	parallel
Strand 3	A	483	488	parallel
Strand 4	A	455	458	parallel
Strand 5	A	248	253	parallel
Strand 6	A	202	206	parallel
Strand 7	A	174	177	parallel
Strand 8	A	103	105	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	260	261	parallel
Strand 3	A	433	434	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	634	first strand
Strand 2	A	642	647	anti-parallel
Strand 3	A	653	663	anti-parallel
Strand 4	A	669	678	anti-parallel
Strand 5	A	704	707	parallel
Strand 6	A	737	742	anti-parallel
Strand 7	A	727	733	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	516	521	parallel
Strand 3	B	483	488	parallel
Strand 4	B	455	458	parallel
Strand 5	B	248	253	parallel
Strand 6	B	202	206	parallel
Strand 7	B	174	177	parallel
Strand 8	B	103	105	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	260	261	parallel
Strand 3	B	433	434	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	634	first strand
Strand 2	B	642	647	anti-parallel
Strand 3	B	653	663	anti-parallel
Strand 4	B	669	678	anti-parallel
Strand 5	B	704	708	parallel
Strand 6	B	737	742	anti-parallel
Strand 7	B	727	733	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	516	521	parallel
Strand 3	C	483	488	parallel
Strand 4	C	455	458	parallel
Strand 5	C	248	253	parallel
Strand 6	C	202	206	parallel
Strand 7	C	174	177	parallel
Strand 8	C	103	105	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	260	261	parallel
Strand 3	C	433	434	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	634	first strand
Strand 2	C	642	647	anti-parallel
Strand 3	C	655	663	anti-parallel
Strand 4	C	669	678	anti-parallel
Strand 5	C	702	707	parallel
Strand 6	C	737	742	anti-parallel
Strand 7	C	727	733	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	516	521	parallel
Strand 3	D	483	488	parallel
Strand 4	D	455	458	parallel
Strand 5	D	248	253	parallel
Strand 6	D	202	206	parallel
Strand 7	D	174	177	parallel
Strand 8	D	103	105	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	223	first strand
Strand 2	D	260	261	parallel
Strand 3	D	433	434	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	369	370	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	629	634	first strand
Strand 2	D	642	647	anti-parallel
Strand 3	D	653	663	anti-parallel
Strand 4	D	669	678	anti-parallel
Strand 5	D	704	707	parallel
Strand 6	D	737	742	anti-parallel
Strand 7	D	727	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EDW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EDW