Analysis of interatomic Contacts of Structural Units in PDB entry:
6EEC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EEC entry

There are 10 chains in PDB entry 6EEC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	MET 1	SER 237
C	ASN 30	SER 1140
D	GLY -1	ALA 1282
E	GLY 27	GLY 109
F	SER 209	LEU 527
J	ARG 4	GLY 111
O	C 14	G 78
P	C 77	G 141
M	ILE 2	ALA 160

There are119 helices in PDB entry 6EEC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	43	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	225	Right-handed alpha
Helix 5	AA5	B	30	46	Right-handed alpha
Helix 6	AA6	B	72	81	Right-handed alpha
Helix 7	AA7	B	203	224	Right-handed alpha
Helix 8	AA8	C	54	66	Right-handed alpha
Helix 9	AA9	C	67	77	Right-handed alpha
Helix 10	AB1	C	84	94	Right-handed alpha
Helix 11	AB2	C	118	126	Right-handed alpha
Helix 12	AB3	C	233	241	Right-handed alpha
Helix 13	AB4	C	244	252	Right-handed alpha
Helix 14	AB5	C	255	264	Right-handed alpha
Helix 15	AB6	C	269	282	Right-handed alpha
Helix 16	AB7	C	291	297	Right-handed alpha
Helix 17	AB8	C	309	321	Right-handed alpha
Helix 18	AB9	C	334	349	Right-handed alpha
Helix 19	AC1	C	380	407	Right-handed alpha
Helix 20	AC2	C	413	418	Right-handed alpha
Helix 21	AC3	C	420	432	Right-handed alpha
Helix 22	AC4	C	444	452	Right-handed alpha
Helix 23	AC5	C	469	474	Right-handed alpha
Helix 24	AC6	C	534	539	Right-handed alpha
Helix 25	AC7	C	590	594	Right-handed 310
Helix 26	AC8	C	596	600	Right-handed 310
Helix 27	AC9	C	601	612	Right-handed alpha
Helix 28	AD1	C	629	637	Right-handed alpha
Helix 29	AD2	C	739	744	Right-handed alpha
Helix 30	AD3	C	815	826	Right-handed alpha
Helix 31	AD4	C	922	926	Right-handed 310
Helix 32	AD5	C	928	943	Right-handed alpha
Helix 33	AD6	C	954	958	Right-handed 310
Helix 34	AD7	C	981	991	Right-handed alpha
Helix 35	AD8	C	1036	1040	Right-handed 310
Helix 36	AD9	C	1069	1079	Right-handed alpha
Helix 37	AE1	C	1082	1091	Right-handed alpha
Helix 38	AE2	C	1095	1109	Right-handed alpha
Helix 39	AE3	C	1118	1131	Right-handed alpha
Helix 40	AE4	D	16	24	Right-handed alpha
Helix 41	AE5	D	48	53	Right-handed alpha
Helix 42	AE6	D	86	90	Right-handed 310
Helix 43	AE7	D	104	107	Right-handed 310
Helix 44	AE8	D	112	119	Right-handed alpha
Helix 45	AE9	D	121	130	Right-handed alpha
Helix 46	AF1	D	140	147	Right-handed alpha
Helix 47	AF2	D	147	187	Right-handed alpha
Helix 48	AF3	D	190	228	Right-handed alpha
Helix 49	AF4	D	238	246	Right-handed alpha
Helix 50	AF5	D	248	250	Right-handed 310
Helix 51	AF6	D	257	267	Right-handed alpha
Helix 52	AF7	D	269	284	Right-handed alpha
Helix 53	AF8	D	285	305	Right-handed alpha
Helix 54	AF9	D	308	311	Right-handed 310
Helix 55	AG1	D	321	325	Right-handed 310
Helix 56	AG2	D	339	361	Right-handed alpha
Helix 57	AG3	D	363	383	Right-handed alpha
Helix 58	AG4	D	393	397	Right-handed 310
Helix 59	AG5	D	401	405	Right-handed 310
Helix 60	AG6	D	444	452	Right-handed alpha
Helix 61	AG7	D	452	463	Right-handed alpha
Helix 62	AG8	D	468	479	Right-handed alpha
Helix 63	AG9	D	481	492	Right-handed alpha
Helix 64	AH1	D	525	527	Right-handed 310
Helix 65	AH2	D	528	533	Right-handed alpha
Helix 66	AH3	D	548	558	Right-handed alpha
Helix 67	AH4	D	578	590	Right-handed alpha
Helix 68	AH5	D	614	624	Right-handed alpha
Helix 69	AH6	D	643	651	Right-handed alpha
Helix 70	AH7	D	656	660	Right-handed 310
Helix 71	AH8	D	667	677	Right-handed alpha
Helix 72	AH9	D	689	704	Right-handed alpha
Helix 73	AI1	D	705	726	Right-handed alpha
Helix 74	AI2	D	741	762	Right-handed alpha
Helix 75	AI3	D	766	793	Right-handed alpha
Helix 76	AI4	D	797	805	Right-handed alpha
Helix 77	AI5	D	810	818	Right-handed alpha
Helix 78	AI6	D	845	881	Right-handed alpha
Helix 79	AI7	D	945	956	Right-handed alpha
Helix 80	AI8	D	994	1005	Right-handed alpha
Helix 81	AI9	D	1006	1010	Right-handed 310
Helix 82	AJ1	D	1027	1037	Right-handed alpha
Helix 83	AJ2	D	1117	1145	Right-handed alpha
Helix 84	AJ3	D	1150	1162	Right-handed alpha
Helix 85	AJ4	D	1183	1195	Right-handed alpha
Helix 86	AJ5	D	1209	1216	Right-handed alpha
Helix 87	AJ6	D	1219	1224	Right-handed alpha
Helix 88	AJ7	D	1228	1240	Right-handed alpha
Helix 89	AJ8	D	1248	1254	Right-handed alpha
Helix 90	AJ9	D	1264	1269	Right-handed alpha
Helix 91	AK1	D	1275	1282	Right-handed alpha
Helix 92	AK2	E	33	37	Right-handed 310
Helix 93	AK3	E	39	44	Right-handed alpha
Helix 94	AK4	E	49	71	Right-handed alpha
Helix 95	AK5	E	90	102	Right-handed alpha
Helix 96	AK6	F	210	219	Right-handed alpha
Helix 97	AK7	F	226	236	Right-handed alpha
Helix 98	AK8	F	242	266	Right-handed alpha
Helix 99	AK9	F	274	308	Right-handed alpha
Helix 100	AL1	F	316	335	Right-handed alpha
Helix 101	AL2	F	342	362	Right-handed alpha
Helix 102	AL3	F	369	391	Right-handed alpha
Helix 103	AL4	F	395	404	Right-handed alpha
Helix 104	AL5	F	406	417	Right-handed alpha
Helix 105	AL6	F	434	439	Right-handed 310
Helix 106	AL7	F	448	465	Right-handed alpha
Helix 107	AL8	F	468	480	Right-handed alpha
Helix 108	AL9	F	488	497	Right-handed alpha
Helix 109	AM1	F	499	515	Right-handed alpha
Helix 110	AM2	F	516	521	Right-handed alpha
Helix 111	AM3	F	523	527	Right-handed 310
Helix 112	AM4	J	80	87	Right-handed alpha
Helix 113	AM5	J	90	110	Right-handed alpha
Helix 114	AM6	M	52	57	Right-handed alpha
Helix 115	AM7	M	63	75	Right-handed alpha
Helix 116	AM8	M	84	99	Right-handed alpha
Helix 117	AM9	M	100	118	Right-handed alpha
Helix 118	AN1	M	121	144	Right-handed alpha
Helix 119	AN2	M	146	160	Right-handed alpha

There are 41 sheets in PDB entry 6EEC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	177	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	26	first strand
Strand 2	B	190	193	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	142	144	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	93	100	anti-parallel
Strand 3	B	133	140	anti-parallel
Strand 4	B	53	56	anti-parallel
Strand 5	B	161	163	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	175	first strand
Strand 2	B	195	198	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	106	anti-parallel
Strand 3	C	138	141	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	130	135	anti-parallel
Strand 3	C	152	158	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	379	first strand
Strand 2	C	177	179	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	198	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	222	223	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	580	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	562	first strand
Strand 2	C	568	572	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	703	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	652	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	898	anti-parallel
Strand 5	C	735	737	parallel
Strand 6	C	915	916	anti-parallel
Strand 7	C	716	722	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	760	first strand
Strand 2	C	865	878	anti-parallel
Strand 3	C	847	852	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1136	1138	first strand
Strand 2	D	9	11	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	330	first strand
Strand 2	J	7	9	anti-parallel
Strand 3	F	440	441	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	522	524	first strand
Strand 2	D	427	432	parallel
Strand 3	D	540	542	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	441	first strand
Strand 2	D	511	514	parallel
Strand 3	D	496	497	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	633	637	parallel
Strand 3	D	662	666	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	898	899	first strand
Strand 2	D	960	961	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	930	first strand
Strand 2	D	936	938	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1053	1054	first strand
Strand 2	D	1064	1066	anti-parallel
Strand 3	D	1076	1077	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1169	anti-parallel
Strand 3	D	1202	1205	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	45	first strand
Strand 2	J	27	33	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	49	first strand
Strand 2	M	30	39	anti-parallel
Strand 3	M	15	27	anti-parallel
Strand 4	M	9	11	anti-parallel
Strand 5	M	59	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EEC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EEC