Analysis of interatomic Contacts of Structural Units in PDB entry:
6EEI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EEI entry

There are 4 chains in PDB entry 6EEI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8HIS 308
A
 TRP 310HIS 489
B
 VAL 8HIS 308
B
 TRP 310HIS 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6EEI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 34Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
63 74Right-handed alpha
Helix 4
AA4
A
75 79Right-handed 310
Helix 5
AA5
A
96 110Right-handed alpha
Helix 6
AA6
A
119 137Right-handed alpha
Helix 7
AA7
A
140 144Right-handed 310
Helix 8
AA8
A
156 177Right-handed alpha
Helix 9
AA9
A
178 182Right-handed 310
Helix 10
AB1
A
193 204Right-handed alpha
Helix 11
AB2
A
206 208Right-handed 310
Helix 12
AB3
A
216 220Right-handed 310
Helix 13
AB4
A
224 238Right-handed alpha
Helix 14
AB5
A
259 270Right-handed alpha
Helix 15
AB6
A
280 286Right-handed 310
Helix 16
AB7
A
287 292Right-handed alpha
Helix 17
AB8
A
293 295Right-handed 310
Helix 18
AB9
A
296 300Right-handed 310
Helix 19
AC1
A
307 311Right-handed alpha
Helix 20
AC2
A
324 333Right-handed alpha
Helix 21
AC3
A
351 356Right-handed 310
Helix 22
AC4
A
364 401Right-handed alpha
Helix 23
AC5
A
431 444Right-handed alpha
Helix 24
AC6
A
469 489Right-handed alpha
Helix 25
AC7
B
13 34Right-handed alpha
Helix 26
AC8
B
35 38Right-handed 310
Helix 27
AC9
B
63 74Right-handed alpha
Helix 28
AD1
B
75 79Right-handed 310
Helix 29
AD2
B
96 110Right-handed alpha
Helix 30
AD3
B
119 137Right-handed alpha
Helix 31
AD4
B
140 144Right-handed 310
Helix 32
AD5
B
156 177Right-handed alpha
Helix 33
AD6
B
178 182Right-handed 310
Helix 34
AD7
B
193 204Right-handed alpha
Helix 35
AD8
B
206 208Right-handed 310
Helix 36
AD9
B
216 220Right-handed 310
Helix 37
AE1
B
224 238Right-handed alpha
Helix 38
AE2
B
259 270Right-handed alpha
Helix 39
AE3
B
280 286Right-handed 310
Helix 40
AE4
B
287 292Right-handed alpha
Helix 41
AE5
B
293 295Right-handed 310
Helix 42
AE6
B
296 300Right-handed 310
Helix 43
AE7
B
307 311Right-handed alpha
Helix 44
AE8
B
324 333Right-handed alpha
Helix 45
AE9
B
351 356Right-handed 310
Helix 46
AF1
B
364 400Right-handed alpha
Helix 47
AF2
B
432 444Right-handed alpha
Helix 48
AF3
B
469 489Right-handed alpha
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There are 4 sheets in PDB entry 6EEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
302 306anti-parallel
Strand 4
A
273 277parallel
Strand 5
A
241 248parallel
Strand 6
A
184 189parallel
Strand 7
A
210 213parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 406first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
456 462anti-parallel
Strand 4
A
449 453anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 154first strand
Strand 2
B
318 322anti-parallel
Strand 3
B
302 306anti-parallel
Strand 4
B
273 277parallel
Strand 5
B
241 248parallel
Strand 6
B
184 189parallel
Strand 7
B
210 213parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
404 406first strand
Strand 2
B
414 419anti-parallel
Strand 3
B
456 462anti-parallel
Strand 4
B
450 453anti-parallel
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