Analysis of interatomic Contacts of Structural Units in PDB entry:
6EEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EEP entry

There are 2 chains in PDB entry 6EEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1LYS 216
B
 HIS 0LYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6EEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 14Right-handed alpha
Helix 2
AA2
A
27 40Right-handed alpha
Helix 3
AA3
A
51 61Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
97 108Right-handed alpha
Helix 6
AA6
A
118 120Right-handed 310
Helix 7
AA7
A
137 148Right-handed alpha
Helix 8
AA8
A
176 186Right-handed alpha
Helix 9
AA9
B
1 14Right-handed alpha
Helix 10
AB1
B
27 39Right-handed alpha
Helix 11
AB2
B
40 44Right-handed 310
Helix 12
AB3
B
51 61Right-handed alpha
Helix 13
AB4
B
67 71Right-handed 310
Helix 14
AB5
B
97 107Right-handed alpha
Helix 15
AB6
B
118 120Right-handed 310
Helix 16
AB7
B
137 148Right-handed alpha
Helix 17
AB8
B
176 186Right-handed alpha
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There are 6 sheets in PDB entry 6EEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
20 24parallel
Strand 3
A
76 79parallel
Strand 4
A
110 116parallel
Strand 5
A
203 207parallel
Strand 6
A
212 216anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
90 91anti-parallel
Strand 3
A
195 196anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
165 170anti-parallel
Strand 3
A
129 133anti-parallel
Strand 4
A
190 193anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
21 24parallel
Strand 3
B
74 79parallel
Strand 4
B
108 116parallel
Strand 5
B
203 208parallel
Strand 6
B
211 216anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
90 91anti-parallel
Strand 3
B
195 196anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 154first strand
Strand 2
B
165 170anti-parallel
Strand 3
B
129 133anti-parallel
Strand 4
B
190 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il