Analysis of interatomic Contacts of Structural Units in PDB entry:
6EEU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EEU entry

There is 1 chain in PDB entry 6EEU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLY 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6EEU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
43 48Right-handed alpha
Helix 4
AA4
A
85 99Right-handed alpha
Helix 5
AA5
A
123 134Right-handed alpha
Helix 6
AA6
A
134 144Right-handed alpha
Helix 7
AA7
A
146 152Right-handed alpha
Helix 8
AA8
A
186 206Right-handed alpha
Helix 9
AA9
A
230 235Right-handed alpha
Helix 10
AB1
A
240 258Right-handed alpha
Helix 11
AB2
A
258 280Right-handed alpha
Helix 12
AB3
A
283 295Right-handed alpha
Helix 13
AB4
A
330 335Right-handed alpha
Helix 14
AB5
A
335 346Right-handed alpha
Helix 15
AB6
A
349 375Right-handed alpha
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There are 4 sheets in PDB entry 6EEU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
77 80anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
73 74anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
222 229anti-parallel
Strand 3
A
315 322anti-parallel
Strand 4
A
305 309anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 164first strand
Strand 2
A
172 180anti-parallel
Strand 3
A
111 119anti-parallel
Strand 4
A
208 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il