Analysis of interatomic Contacts of Structural Units in PDB entry:
6EF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EF0 entry

There are 14 chains in PDB entry 6EF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 11	ILE 248
B	MET 1	LEU 250
C	MET 1	ILE 244
D	MET 1	GLU 242
E	MET 1	ALA 249
F	MET 1	ILE 234
G	SER 3	ASN 248
H	GLU 201	PHE 457
I	PRO 166	TYR 436
J	ALA 130	LYS 405
K	SER 157	LYS 428
L	ASP 164	LYS 436
M	PRO 176	TYR 433
s	SER 117	GLN 128

There are129 helices in PDB entry 6EF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	35	Right-handed alpha
Helix 2	AA2	A	87	109	Right-handed alpha
Helix 3	AA3	A	113	118	Right-handed alpha
Helix 4	AA4	A	122	128	Right-handed alpha
Helix 5	AA5	A	182	187	Right-handed alpha
Helix 6	AA6	A	200	215	Right-handed alpha
Helix 7	AA7	A	238	245	Right-handed 310
Helix 8	AA8	B	20	31	Right-handed alpha
Helix 9	AA9	B	82	96	Right-handed alpha
Helix 10	AB1	B	97	102	Right-handed alpha
Helix 11	AB2	B	109	120	Right-handed alpha
Helix 12	AB3	B	167	179	Right-handed alpha
Helix 13	AB4	B	184	198	Right-handed alpha
Helix 14	AB5	B	205	207	Right-handed 310
Helix 15	AB6	C	20	29	Right-handed alpha
Helix 16	AB7	C	30	32	Right-handed 310
Helix 17	AB8	C	81	84	Right-handed 310
Helix 18	AB9	C	86	103	Right-handed alpha
Helix 19	AC1	C	111	123	Right-handed alpha
Helix 20	AC2	C	169	177	Right-handed alpha
Helix 21	AC3	C	189	198	Right-handed alpha
Helix 22	AC4	C	207	211	Right-handed 310
Helix 23	AC5	C	231	242	Right-handed alpha
Helix 24	AC6	D	17	27	Right-handed alpha
Helix 25	AC7	D	28	30	Right-handed 310
Helix 26	AC8	D	81	100	Right-handed alpha
Helix 27	AC9	D	108	120	Right-handed alpha
Helix 28	AD1	D	171	179	Right-handed alpha
Helix 29	AD2	D	187	200	Right-handed alpha
Helix 30	AD3	D	201	203	Right-handed 310
Helix 31	AD4	D	216	220	Right-handed 310
Helix 32	AD5	D	225	239	Right-handed alpha
Helix 33	AD6	E	21	30	Right-handed alpha
Helix 34	AD7	E	85	103	Right-handed alpha
Helix 35	AD8	E	109	118	Right-handed alpha
Helix 36	AD9	E	119	122	Right-handed 310
Helix 37	AE1	E	176	185	Right-handed alpha
Helix 38	AE2	E	192	208	Right-handed alpha
Helix 39	AE3	E	213	215	Right-handed 310
Helix 40	AE4	E	232	240	Right-handed alpha
Helix 41	AE5	E	241	248	Right-handed 310
Helix 42	AE6	F	19	32	Right-handed alpha
Helix 43	AE7	F	78	95	Right-handed alpha
Helix 44	AE8	F	105	119	Right-handed alpha
Helix 45	AE9	F	165	175	Right-handed alpha
Helix 46	AF1	F	185	196	Right-handed alpha
Helix 47	AF2	F	226	234	Right-handed 310
Helix 48	AF3	G	26	33	Right-handed alpha
Helix 49	AF4	G	82	104	Right-handed alpha
Helix 50	AF5	G	108	120	Right-handed alpha
Helix 51	AF6	G	121	124	Right-handed 310
Helix 52	AF7	G	165	167	Right-handed 310
Helix 53	AF8	G	168	181	Right-handed alpha
Helix 54	AF9	G	188	204	Right-handed alpha
Helix 55	AG1	G	205	208	Right-handed 310
Helix 56	AG2	G	221	225	Right-handed alpha
Helix 57	AG3	G	233	246	Right-handed alpha
Helix 58	AG4	H	215	221	Right-handed alpha
Helix 59	AG5	H	232	237	Right-handed alpha
Helix 60	AG6	H	255	265	Right-handed alpha
Helix 61	AG7	H	266	269	Right-handed 310
Helix 62	AG8	H	275	280	Right-handed alpha
Helix 63	AG9	H	286	299	Right-handed alpha
Helix 64	AH1	H	311	316	Right-handed alpha
Helix 65	AH2	H	318	322	Right-handed 310
Helix 66	AH3	H	327	341	Right-handed alpha
Helix 67	AH4	H	381	387	Right-handed alpha
Helix 68	AH5	H	405	410	Right-handed alpha
Helix 69	AH6	H	418	427	Right-handed alpha
Helix 70	AH7	H	428	434	Right-handed alpha
Helix 71	AH8	H	440	451	Right-handed alpha
Helix 72	AH9	I	190	198	Right-handed alpha
Helix 73	AI1	I	198	204	Right-handed alpha
Helix 74	AI2	I	205	212	Right-handed alpha
Helix 75	AI3	I	230	240	Right-handed alpha
Helix 76	AI4	I	250	253	Right-handed 310
Helix 77	AI5	I	260	274	Right-handed alpha
Helix 78	AI6	I	283	287	Right-handed 310
Helix 79	AI7	I	298	316	Right-handed alpha
Helix 80	AI8	I	354	360	Right-handed alpha
Helix 81	AI9	I	362	367	Right-handed alpha
Helix 82	AJ1	I	376	380	Right-handed 310
Helix 83	AJ2	I	391	405	Right-handed alpha
Helix 84	AJ3	I	412	427	Right-handed alpha
Helix 85	AJ4	J	133	139	Right-handed 310
Helix 86	AJ5	J	153	161	Right-handed alpha
Helix 87	AJ6	J	161	166	Right-handed alpha
Helix 88	AJ7	J	195	205	Right-handed alpha
Helix 89	AJ8	J	223	241	Right-handed alpha
Helix 90	AJ9	J	265	276	Right-handed alpha
Helix 91	AK1	J	301	306	Right-handed alpha
Helix 92	AK2	J	320	331	Right-handed alpha
Helix 93	AK3	J	344	350	Right-handed alpha
Helix 94	AK4	J	357	371	Right-handed alpha
Helix 95	AK5	J	378	391	Right-handed alpha
Helix 96	AK6	K	179	189	Right-handed alpha
Helix 97	AK7	K	189	194	Right-handed alpha
Helix 98	AK8	K	195	200	Right-handed alpha
Helix 99	AK9	K	221	229	Right-handed alpha
Helix 100	AL1	K	248	265	Right-handed alpha
Helix 101	AL2	K	274	278	Right-handed 310
Helix 102	AL3	K	290	305	Right-handed alpha
Helix 103	AL4	K	345	359	Right-handed alpha
Helix 104	AL5	K	381	396	Right-handed alpha
Helix 105	AL6	K	404	415	Right-handed alpha
Helix 106	AL7	L	166	171	Right-handed alpha
Helix 107	AL8	L	179	183	Right-handed 310
Helix 108	AL9	L	204	211	Right-handed alpha
Helix 109	AM1	L	227	240	Right-handed alpha
Helix 110	AM2	L	257	272	Right-handed alpha
Helix 111	AM3	L	282	287	Right-handed 310
Helix 112	AM4	L	298	312	Right-handed alpha
Helix 113	AM5	L	334	339	Right-handed alpha
Helix 114	AM6	L	355	366	Right-handed alpha
Helix 115	AM7	L	379	385	Right-handed 310
Helix 116	AM8	L	389	403	Right-handed alpha
Helix 117	AM9	L	414	428	Right-handed alpha
Helix 118	AN1	M	186	194	Right-handed alpha
Helix 119	AN2	M	194	202	Right-handed alpha
Helix 120	AN3	M	206	211	Right-handed alpha
Helix 121	AN4	M	227	236	Right-handed alpha
Helix 122	AN5	M	247	251	Right-handed 310
Helix 123	AN6	M	257	271	Right-handed alpha
Helix 124	AN7	M	298	311	Right-handed alpha
Helix 125	AN8	M	353	364	Right-handed alpha
Helix 126	AN9	M	375	380	Right-handed alpha
Helix 127	AO1	M	387	404	Right-handed alpha
Helix 128	AO2	M	415	420	Right-handed alpha
Helix 129	AO3	M	421	423	Right-handed 310

There are 23 sheets in PDB entry 6EF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	52	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	141	146	anti-parallel
Strand 3	A	152	157	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	232	234	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	235	237	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	71	74	anti-parallel
Strand 3	B	135	138	anti-parallel
Strand 4	B	146	149	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	164	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	44	49	anti-parallel
Strand 4	C	214	216	anti-parallel
Strand 5	C	228	229	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	137	140	anti-parallel
Strand 3	C	146	147	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	133	134	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	158	159	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	33	37	anti-parallel
Strand 3	D	42	45	anti-parallel
Strand 4	D	212	215	anti-parallel
Strand 5	D	222	223	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	D	133	136	anti-parallel
Strand 3	D	147	150	anti-parallel
Strand 4	D	156	158	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	171	first strand
Strand 2	E	37	40	anti-parallel
Strand 3	E	46	51	anti-parallel
Strand 4	E	217	223	anti-parallel
Strand 5	E	227	230	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	69	first strand
Strand 2	E	74	77	anti-parallel
Strand 3	E	143	146	anti-parallel
Strand 4	E	154	155	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	39	first strand
Strand 2	F	43	49	anti-parallel
Strand 3	F	211	217	anti-parallel
Strand 4	F	223	225	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	70	73	anti-parallel
Strand 3	F	133	138	anti-parallel
Strand 4	F	141	146	anti-parallel
Strand 5	F	154	155	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	41	first strand
Strand 2	G	45	52	anti-parallel
Strand 3	G	213	216	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	41	first strand
Strand 2	G	45	52	anti-parallel
Strand 3	G	219	220	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	69	first strand
Strand 2	G	75	77	anti-parallel
Strand 3	G	137	139	anti-parallel
Strand 4	G	149	150	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	142	first strand
Strand 2	G	145	146	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	246	248	first strand
Strand 2	H	373	375	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	246	248	first strand
Strand 2	I	280	282	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	291	293	first strand
Strand 2	J	185	188	parallel
Strand 3	J	313	315	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	218	219	first strand
Strand 2	L	322	325	parallel
Strand 3	L	277	280	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EF0