Analysis of interatomic Contacts of Structural Units in PDB entry:
6EF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EF2 entry

There are 14 chains in PDB entry 6EF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 10	ALA 247
B	MET 1	ALA 249
C	ARG 4	ILE 244
D	SER 2	GLU 242
E	PHE 2	ALA 248
F	ARG 3	ILE 234
G	SER 3	ASN 248
H	SER 194	TYR 466
I	THR 178	LEU 437
J	ASP 144	LYS 405
K	THR 170	LYS 428
L	LEU 166	GLU 429
M	SER 165	ALA 434
s	ASN 112	VAL 127

There are133 helices in PDB entry 6EF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	34	Right-handed alpha
Helix 2	AA2	A	86	109	Right-handed alpha
Helix 3	AA3	A	113	128	Right-handed alpha
Helix 4	AA4	A	174	188	Right-handed alpha
Helix 5	AA5	A	198	215	Right-handed alpha
Helix 6	AA6	A	242	247	Right-handed alpha
Helix 7	AA7	B	20	31	Right-handed alpha
Helix 8	AA8	B	84	97	Right-handed alpha
Helix 9	AA9	B	97	102	Right-handed alpha
Helix 10	AB1	B	107	119	Right-handed alpha
Helix 11	AB2	B	168	178	Right-handed alpha
Helix 12	AB3	B	185	197	Right-handed alpha
Helix 13	AB4	B	218	222	Right-handed 310
Helix 14	AB5	B	239	245	Right-handed alpha
Helix 15	AB6	B	246	249	Right-handed 310
Helix 16	AB7	C	19	27	Right-handed alpha
Helix 17	AB8	C	28	32	Right-handed 310
Helix 18	AB9	C	81	103	Right-handed alpha
Helix 19	AC1	C	107	117	Right-handed alpha
Helix 20	AC2	C	168	178	Right-handed alpha
Helix 21	AC3	C	186	200	Right-handed alpha
Helix 22	AC4	C	207	211	Right-handed 310
Helix 23	AC5	C	231	234	Right-handed 310
Helix 24	AC6	C	235	241	Right-handed alpha
Helix 25	AC7	D	22	28	Right-handed alpha
Helix 26	AC8	D	79	101	Right-handed alpha
Helix 27	AC9	D	105	118	Right-handed alpha
Helix 28	AD1	D	118	123	Right-handed alpha
Helix 29	AD2	D	167	179	Right-handed alpha
Helix 30	AD3	D	187	196	Right-handed alpha
Helix 31	AD4	D	199	204	Right-handed alpha
Helix 32	AD5	D	226	231	Right-handed alpha
Helix 33	AD6	D	231	239	Right-handed alpha
Helix 34	AD7	E	22	32	Right-handed alpha
Helix 35	AD8	E	60	64	Right-handed 310
Helix 36	AD9	E	81	93	Right-handed alpha
Helix 37	AE1	E	94	103	Right-handed alpha
Helix 38	AE2	E	108	121	Right-handed alpha
Helix 39	AE3	E	122	124	Right-handed 310
Helix 40	AE4	E	178	183	Right-handed alpha
Helix 41	AE5	E	184	186	Right-handed 310
Helix 42	AE6	E	196	207	Right-handed alpha
Helix 43	AE7	E	232	248	Right-handed alpha
Helix 44	AE8	F	19	26	Right-handed alpha
Helix 45	AE9	F	27	32	Right-handed 310
Helix 46	AF1	F	78	92	Right-handed alpha
Helix 47	AF2	F	104	122	Right-handed alpha
Helix 48	AF3	F	165	176	Right-handed alpha
Helix 49	AF4	F	185	198	Right-handed alpha
Helix 50	AF5	F	207	211	Right-handed 310
Helix 51	AF6	F	226	230	Right-handed 310
Helix 52	AF7	G	21	32	Right-handed alpha
Helix 53	AF8	G	83	97	Right-handed alpha
Helix 54	AF9	G	99	104	Right-handed alpha
Helix 55	AG1	G	108	123	Right-handed alpha
Helix 56	AG2	G	168	176	Right-handed alpha
Helix 57	AG3	G	176	183	Right-handed alpha
Helix 58	AG4	G	189	205	Right-handed alpha
Helix 59	AG5	G	206	208	Right-handed 310
Helix 60	AG6	G	235	240	Right-handed alpha
Helix 61	AG7	G	240	248	Right-handed alpha
Helix 62	AG8	H	195	199	Right-handed alpha
Helix 63	AG9	H	216	225	Right-handed alpha
Helix 64	AH1	H	225	231	Right-handed alpha
Helix 65	AH2	H	232	239	Right-handed alpha
Helix 66	AH3	H	256	268	Right-handed alpha
Helix 67	AH4	H	287	301	Right-handed alpha
Helix 68	AH5	H	327	341	Right-handed alpha
Helix 69	AH6	H	357	361	Right-handed 310
Helix 70	AH7	H	381	386	Right-handed alpha
Helix 71	AH8	H	388	393	Right-handed alpha
Helix 72	AH9	H	403	411	Right-handed alpha
Helix 73	AI1	H	417	433	Right-handed alpha
Helix 74	AI2	H	440	452	Right-handed alpha
Helix 75	AI3	I	191	198	Right-handed alpha
Helix 76	AI4	I	205	212	Right-handed alpha
Helix 77	AI5	I	229	239	Right-handed alpha
Helix 78	AI6	I	259	274	Right-handed alpha
Helix 79	AI7	I	283	287	Right-handed 310
Helix 80	AI8	I	299	314	Right-handed alpha
Helix 81	AI9	I	354	366	Right-handed alpha
Helix 82	AJ1	I	376	381	Right-handed alpha
Helix 83	AJ2	I	390	405	Right-handed alpha
Helix 84	AJ3	I	412	424	Right-handed alpha
Helix 85	AJ4	J	156	161	Right-handed alpha
Helix 86	AJ5	J	164	170	Right-handed alpha
Helix 87	AJ6	J	171	177	Right-handed alpha
Helix 88	AJ7	J	194	205	Right-handed alpha
Helix 89	AJ8	J	225	239	Right-handed alpha
Helix 90	AJ9	J	264	276	Right-handed alpha
Helix 91	AK1	J	278	285	Right-handed alpha
Helix 92	AK2	J	301	306	Right-handed alpha
Helix 93	AK3	J	320	331	Right-handed alpha
Helix 94	AK4	J	343	348	Right-handed alpha
Helix 95	AK5	J	355	371	Right-handed alpha
Helix 96	AK6	J	379	390	Right-handed alpha
Helix 97	AK7	J	391	395	Right-handed 310
Helix 98	AK8	K	179	188	Right-handed alpha
Helix 99	AK9	K	188	194	Right-handed alpha
Helix 100	AL1	K	195	202	Right-handed alpha
Helix 101	AL2	K	219	229	Right-handed alpha
Helix 102	AL3	K	238	242	Right-handed 310
Helix 103	AL4	K	248	264	Right-handed alpha
Helix 104	AL5	K	287	304	Right-handed alpha
Helix 105	AL6	K	345	359	Right-handed alpha
Helix 106	AL7	K	380	396	Right-handed alpha
Helix 107	AL8	K	407	414	Right-handed alpha
Helix 108	AL9	K	420	424	Right-handed 310
Helix 109	AM1	L	171	175	Right-handed 310
Helix 110	AM2	L	187	197	Right-handed alpha
Helix 111	AM3	L	197	203	Right-handed alpha
Helix 112	AM4	L	206	211	Right-handed alpha
Helix 113	AM5	L	229	240	Right-handed alpha
Helix 114	AM6	L	247	251	Right-handed 310
Helix 115	AM7	L	259	273	Right-handed alpha
Helix 116	AM8	L	282	286	Right-handed 310
Helix 117	AM9	L	294	313	Right-handed alpha
Helix 118	AN1	L	353	365	Right-handed alpha
Helix 119	AN2	L	378	383	Right-handed alpha
Helix 120	AN3	L	387	403	Right-handed alpha
Helix 121	AN4	L	411	423	Right-handed alpha
Helix 122	AN5	L	424	429	Right-handed alpha
Helix 123	AN6	M	186	198	Right-handed alpha
Helix 124	AN7	M	198	203	Right-handed alpha
Helix 125	AN8	M	205	210	Right-handed alpha
Helix 126	AN9	M	227	240	Right-handed alpha
Helix 127	AO1	M	247	253	Right-handed alpha
Helix 128	AO2	M	258	272	Right-handed alpha
Helix 129	AO3	M	298	311	Right-handed alpha
Helix 130	AO4	M	353	364	Right-handed alpha
Helix 131	AO5	M	375	382	Right-handed alpha
Helix 132	AO6	M	387	406	Right-handed alpha
Helix 133	AO7	M	411	423	Right-handed alpha

There are 27 sheets in PDB entry 6EF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	223	229	anti-parallel
Strand 4	A	232	236	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	142	146	anti-parallel
Strand 3	A	152	156	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	235	237	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	72	75	anti-parallel
Strand 3	B	134	138	anti-parallel
Strand 4	B	146	150	anti-parallel
Strand 5	B	156	159	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	45	46	anti-parallel
Strand 4	C	214	217	anti-parallel
Strand 5	C	226	227	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	136	141	anti-parallel
Strand 3	C	145	150	anti-parallel
Strand 4	C	158	159	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	35	37	anti-parallel
Strand 3	D	42	44	anti-parallel
Strand 4	D	213	215	anti-parallel
Strand 5	D	221	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	77	first strand
Strand 2	D	131	138	anti-parallel
Strand 3	D	145	151	anti-parallel
Strand 4	D	155	157	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	171	first strand
Strand 2	E	38	41	anti-parallel
Strand 3	E	46	49	anti-parallel
Strand 4	E	220	223	anti-parallel
Strand 5	E	227	230	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	145	148	anti-parallel
Strand 3	E	152	154	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	164	165	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	161	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	43	48	anti-parallel
Strand 4	F	212	217	anti-parallel
Strand 5	F	220	225	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	70	76	anti-parallel
Strand 3	F	130	136	anti-parallel
Strand 4	F	143	147	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	40	first strand
Strand 2	G	162	164	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	48	first strand
Strand 2	G	217	219	anti-parallel
Strand 3	G	228	229	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	53	first strand
Strand 2	G	212	214	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	70	first strand
Strand 2	G	74	80	anti-parallel
Strand 3	G	134	142	anti-parallel
Strand 4	G	145	146	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	70	first strand
Strand 2	G	74	80	anti-parallel
Strand 3	G	134	142	anti-parallel
Strand 4	G	149	150	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	247	249	first strand
Strand 2	H	374	376	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	270	274	first strand
Strand 2	H	304	308	parallel
Strand 3	H	349	350	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	326	327	first strand
Strand 2	I	219	221	parallel
Strand 3	I	346	348	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	277	279	first strand
Strand 2	I	322	324	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	209	213	first strand
Strand 2	J	243	247	parallel
Strand 3	J	288	292	parallel
Strand 4	J	185	188	parallel
Strand 5	J	313	315	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	269	270	first strand
Strand 2	K	314	315	parallel
Strand 3	K	208	211	parallel
Strand 4	K	336	338	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	325	326	first strand
Strand 2	L	218	220	parallel
Strand 3	L	345	347	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	276	277	first strand
Strand 2	L	321	322	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	276	280	first strand
Strand 2	M	321	327	parallel
Strand 3	M	217	221	parallel
Strand 4	M	346	348	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EF2