Analysis of interatomic Contacts of Structural Units in PDB entry:
6EF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EF5 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 6EF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1SER 230
B
 SER -1THR 229
C
 SER -1SER 230
D
 SER -1SER 230
S
 ARG 508LEU 510
S
 ALA 512GLY 514
R
 LYS 98LEU 99
R
 LEU 101GLN 102
P
 LYS 98LEU 99
P
 LEU 101GLN 102
Q
 ARG 508LEU 510
Q
 ALA 512GLY 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6EF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 32Right-handed alpha
Helix 3
AA3
A
37 68Right-handed alpha
Helix 4
AA4
A
73 104Right-handed alpha
Helix 5
AA5
A
111 131Right-handed alpha
Helix 6
AA6
A
134 160Right-handed alpha
Helix 7
AA7
A
164 181Right-handed alpha
Helix 8
AA8
A
184 201Right-handed alpha
Helix 9
AA9
A
212 229Right-handed alpha
Helix 10
AB1
B
2 16Right-handed alpha
Helix 11
AB2
B
18 32Right-handed alpha
Helix 12
AB3
B
37 68Right-handed alpha
Helix 13
AB4
B
73 104Right-handed alpha
Helix 14
AB5
B
111 131Right-handed alpha
Helix 15
AB6
B
134 160Right-handed alpha
Helix 16
AB7
B
164 181Right-handed alpha
Helix 17
AB8
B
184 201Right-handed alpha
Helix 18
AB9
B
207 210Right-handed 310
Helix 19
AC1
B
211 229Right-handed alpha
Helix 20
AC2
C
2 16Right-handed alpha
Helix 21
AC3
C
18 32Right-handed alpha
Helix 22
AC4
C
37 68Right-handed alpha
Helix 23
AC5
C
75 104Right-handed alpha
Helix 24
AC6
C
111 131Right-handed alpha
Helix 25
AC7
C
134 160Right-handed alpha
Helix 26
AC8
C
164 181Right-handed alpha
Helix 27
AC9
C
184 201Right-handed alpha
Helix 28
AD1
C
211 229Right-handed alpha
Helix 29
AD2
D
2 16Right-handed alpha
Helix 30
AD3
D
18 32Right-handed alpha
Helix 31
AD4
D
37 68Right-handed alpha
Helix 32
AD5
D
72 104Right-handed alpha
Helix 33
AD6
D
111 131Right-handed alpha
Helix 34
AD7
D
134 160Right-handed alpha
Helix 35
AD8
D
164 181Right-handed alpha
Helix 36
AD9
D
184 201Right-handed alpha
Helix 37
AE1
D
207 210Right-handed 310
Helix 38
AE2
D
211 229Right-handed alpha
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There are no sheets in PDB entry 6EF5
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