Analysis of interatomic Contacts of Structural Units in PDB entry:
6EF8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EF8 entry

There are 7 chains in PDB entry 6EF8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ASP 407
B	PHE 1	ASP 407
C	PHE 1	ASP 407
D	PHE 1	ASP 407
E	PHE 1	ASP 407
F	PHE 1	ASP 407
G	PHE 1	ASP 407

There are 70 helices in PDB entry 6EF8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	13	Right-handed alpha
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	85	91	Right-handed 310
Helix 4	AA4	A	139	143	Right-handed 310
Helix 5	AA5	A	234	241	Right-handed alpha
Helix 6	AA6	A	266	276	Right-handed alpha
Helix 7	AA7	A	302	309	Right-handed alpha
Helix 8	AA8	A	313	317	Right-handed 310
Helix 9	AA9	A	376	384	Right-handed alpha
Helix 10	AB1	A	398	402	Right-handed 310
Helix 11	AB2	B	8	13	Right-handed alpha
Helix 12	AB3	B	34	38	Right-handed 310
Helix 13	AB4	B	85	91	Right-handed 310
Helix 14	AB5	B	139	143	Right-handed 310
Helix 15	AB6	B	234	241	Right-handed alpha
Helix 16	AB7	B	266	276	Right-handed alpha
Helix 17	AB8	B	302	309	Right-handed alpha
Helix 18	AB9	B	313	317	Right-handed 310
Helix 19	AC1	B	376	384	Right-handed alpha
Helix 20	AC2	B	398	402	Right-handed 310
Helix 21	AC3	C	8	13	Right-handed alpha
Helix 22	AC4	C	34	38	Right-handed 310
Helix 23	AC5	C	85	91	Right-handed 310
Helix 24	AC6	C	139	143	Right-handed 310
Helix 25	AC7	C	234	241	Right-handed alpha
Helix 26	AC8	C	266	276	Right-handed alpha
Helix 27	AC9	C	302	309	Right-handed alpha
Helix 28	AD1	C	313	317	Right-handed 310
Helix 29	AD2	C	376	384	Right-handed alpha
Helix 30	AD3	C	398	402	Right-handed 310
Helix 31	AD4	D	8	13	Right-handed alpha
Helix 32	AD5	D	34	38	Right-handed 310
Helix 33	AD6	D	85	91	Right-handed 310
Helix 34	AD7	D	139	143	Right-handed 310
Helix 35	AD8	D	234	241	Right-handed alpha
Helix 36	AD9	D	266	276	Right-handed alpha
Helix 37	AE1	D	302	309	Right-handed alpha
Helix 38	AE2	D	313	317	Right-handed 310
Helix 39	AE3	D	376	384	Right-handed alpha
Helix 40	AE4	D	398	402	Right-handed 310
Helix 41	AE5	E	8	13	Right-handed alpha
Helix 42	AE6	E	34	38	Right-handed 310
Helix 43	AE7	E	85	91	Right-handed 310
Helix 44	AE8	E	139	143	Right-handed 310
Helix 45	AE9	E	234	241	Right-handed alpha
Helix 46	AF1	E	266	276	Right-handed alpha
Helix 47	AF2	E	302	309	Right-handed alpha
Helix 48	AF3	E	313	317	Right-handed 310
Helix 49	AF4	E	376	384	Right-handed alpha
Helix 50	AF5	E	398	402	Right-handed 310
Helix 51	AF6	F	8	13	Right-handed alpha
Helix 52	AF7	F	34	38	Right-handed 310
Helix 53	AF8	F	85	91	Right-handed 310
Helix 54	AF9	F	139	143	Right-handed 310
Helix 55	AG1	F	234	241	Right-handed alpha
Helix 56	AG2	F	266	276	Right-handed alpha
Helix 57	AG3	F	302	309	Right-handed alpha
Helix 58	AG4	F	313	317	Right-handed 310
Helix 59	AG5	F	376	384	Right-handed alpha
Helix 60	AG6	F	398	402	Right-handed 310
Helix 61	AG7	G	8	13	Right-handed alpha
Helix 62	AG8	G	34	38	Right-handed 310
Helix 63	AG9	G	85	91	Right-handed 310
Helix 64	AH1	G	139	143	Right-handed 310
Helix 65	AH2	G	234	241	Right-handed alpha
Helix 66	AH3	G	266	276	Right-handed alpha
Helix 67	AH4	G	302	309	Right-handed alpha
Helix 68	AH5	G	313	317	Right-handed 310
Helix 69	AH6	G	376	384	Right-handed alpha
Helix 70	AH7	G	398	402	Right-handed 310

There are 28 sheets in PDB entry 6EF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	101	103	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	183	184	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	264	first strand
Strand 2	A	325	326	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	360	362	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	101	103	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	183	184	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	264	first strand
Strand 2	B	325	326	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	360	362	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	101	103	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	183	184	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	264	first strand
Strand 2	C	325	326	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	360	362	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	101	103	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	183	184	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	264	first strand
Strand 2	D	325	326	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	356	first strand
Strand 2	D	360	362	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	101	103	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	152	first strand
Strand 2	E	183	184	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	264	first strand
Strand 2	E	325	326	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	356	first strand
Strand 2	E	360	362	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	95	first strand
Strand 2	F	101	103	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	152	first strand
Strand 2	F	183	184	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	264	first strand
Strand 2	F	325	326	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	356	first strand
Strand 2	F	360	362	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	95	first strand
Strand 2	G	101	103	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	152	first strand
Strand 2	G	183	184	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	264	first strand
Strand 2	G	325	326	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	356	first strand
Strand 2	G	360	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EF8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EF8