Analysis of interatomic Contacts of Structural Units in PDB entry:
6EFF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EFF entry

There are 4 chains in PDB entry 6EFF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 244	GLN 446
B	GLY 239	ILE 447
C	SER 242	GLN 446
D	ASN 243	ILE 447

There are 16 helices in PDB entry 6EFF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	355	359	Right-handed 310
Helix 2	AA2	A	370	375	Right-handed 310
Helix 3	AA3	A	392	406	Right-handed alpha
Helix 4	AA4	A	437	440	Right-handed 310
Helix 5	AA5	B	355	359	Right-handed 310
Helix 6	AA6	B	370	375	Right-handed 310
Helix 7	AA7	B	392	407	Right-handed alpha
Helix 8	AA8	B	437	440	Right-handed 310
Helix 9	AA9	C	355	359	Right-handed 310
Helix 10	AB1	C	370	375	Right-handed 310
Helix 11	AB2	C	392	407	Right-handed alpha
Helix 12	AB3	C	437	440	Right-handed 310
Helix 13	AB4	D	355	359	Right-handed 310
Helix 14	AB5	D	370	375	Right-handed 310
Helix 15	AB6	D	392	407	Right-handed alpha
Helix 16	AB7	D	437	440	Right-handed 310

There are 16 sheets in PDB entry 6EFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	319	326	anti-parallel
Strand 4	A	301	304	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	258	first strand
Strand 2	A	363	369	parallel
Strand 3	A	334	343	anti-parallel
Strand 4	A	278	282	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	442	444	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	418	first strand
Strand 2	A	424	427	anti-parallel
Strand 3	A	433	436	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	262	270	anti-parallel
Strand 3	B	319	326	anti-parallel
Strand 4	B	301	304	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	363	369	parallel
Strand 3	B	334	343	anti-parallel
Strand 4	B	278	282	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	385	first strand
Strand 2	B	442	444	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	418	first strand
Strand 2	B	424	427	anti-parallel
Strand 3	B	433	436	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	262	270	anti-parallel
Strand 3	C	319	326	anti-parallel
Strand 4	C	301	304	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	258	first strand
Strand 2	C	363	369	parallel
Strand 3	C	334	343	anti-parallel
Strand 4	C	278	282	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	442	444	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	418	first strand
Strand 2	C	424	427	anti-parallel
Strand 3	C	433	436	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	251	first strand
Strand 2	D	262	270	anti-parallel
Strand 3	D	319	326	anti-parallel
Strand 4	D	301	304	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	258	first strand
Strand 2	D	363	369	parallel
Strand 3	D	334	343	anti-parallel
Strand 4	D	278	282	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	385	first strand
Strand 2	D	442	444	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	418	first strand
Strand 2	D	424	427	anti-parallel
Strand 3	D	433	436	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EFF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EFF