Analysis of interatomic Contacts of Structural Units in PDB entry:
6EFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EFH entry

There are 2 chains in PDB entry 6EFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 558
B
 SER 2ASN 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6EFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 16Right-handed alpha
Helix 2
AA2
A
30 36Right-handed alpha
Helix 3
AA3
A
37 40Right-handed 310
Helix 4
AA4
A
50 66Right-handed alpha
Helix 5
AA5
A
75 81Right-handed alpha
Helix 6
AA6
A
81 91Right-handed alpha
Helix 7
AA7
A
108 114Right-handed alpha
Helix 8
AA8
A
123 131Right-handed alpha
Helix 9
AA9
A
144 160Right-handed alpha
Helix 10
AB1
A
170 172Right-handed 310
Helix 11
AB2
A
179 183Right-handed 310
Helix 12
AB3
A
193 210Right-handed alpha
Helix 13
AB4
A
219 225Right-handed alpha
Helix 14
AB5
A
227 239Right-handed alpha
Helix 15
AB6
A
264 268Right-handed 310
Helix 16
AB7
A
269 278Right-handed alpha
Helix 17
AB8
A
325 342Right-handed alpha
Helix 18
AB9
A
366 378Right-handed alpha
Helix 19
AC1
A
390 395Right-handed alpha
Helix 20
AC2
A
396 398Right-handed 310
Helix 21
AC3
A
416 433Right-handed alpha
Helix 22
AC4
A
445 452Right-handed 310
Helix 23
AC5
A
453 460Right-handed alpha
Helix 24
AC6
A
485 489Right-handed 310
Helix 25
AC7
A
494 496Right-handed 310
Helix 26
AC8
A
497 502Right-handed alpha
Helix 27
AC9
A
514 524Right-handed alpha
Helix 28
AD1
A
549 553Right-handed 310
Helix 29
AD2
B
6 17Right-handed alpha
Helix 30
AD3
B
30 36Right-handed alpha
Helix 31
AD4
B
37 39Right-handed 310
Helix 32
AD5
B
50 66Right-handed alpha
Helix 33
AD6
B
75 81Right-handed alpha
Helix 34
AD7
B
81 91Right-handed alpha
Helix 35
AD8
B
123 130Right-handed alpha
Helix 36
AD9
B
131 133Right-handed 310
Helix 37
AE1
B
144 160Right-handed alpha
Helix 38
AE2
B
179 183Right-handed 310
Helix 39
AE3
B
193 211Right-handed alpha
Helix 40
AE4
B
220 225Right-handed alpha
Helix 41
AE5
B
227 239Right-handed alpha
Helix 42
AE6
B
246 249Right-handed 310
Helix 43
AE7
B
264 268Right-handed 310
Helix 44
AE8
B
269 278Right-handed alpha
Helix 45
AE9
B
325 341Right-handed alpha
Helix 46
AF1
B
366 378Right-handed alpha
Helix 47
AF2
B
389 395Right-handed alpha
Helix 48
AF3
B
396 398Right-handed 310
Helix 49
AF4
B
416 433Right-handed alpha
Helix 50
AF5
B
445 451Right-handed alpha
Helix 51
AF6
B
452 460Right-handed alpha
Helix 52
AF7
B
474 480Right-handed alpha
Helix 53
AF8
B
485 489Right-handed 310
Helix 54
AF9
B
494 496Right-handed 310
Helix 55
AG1
B
497 502Right-handed alpha
Helix 56
AG2
B
514 523Right-handed alpha
Helix 57
AG3
B
546 559Right-handed alpha
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There are 9 sheets in PDB entry 6EFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
175 177anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
21 24parallel
Strand 3
A
68 73parallel
Strand 4
A
95 101parallel
Strand 5
A
163 168parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
242 244parallel
Strand 3
A
214 218parallel
Strand 4
A
281 285parallel
Strand 5
A
306 309parallel
Strand 6
A
313 316anti-parallel
Strand 7
A
319 322anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
383 386parallel
Strand 3
A
438 443parallel
Strand 4
A
465 470parallel
Strand 5
A
533 539parallel
Strand 6
A
507 512parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
175 177anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
21 24parallel
Strand 3
B
68 73parallel
Strand 4
B
95 101parallel
Strand 5
B
163 168parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
242 244parallel
Strand 3
B
215 218parallel
Strand 4
B
282 285parallel
Strand 5
B
306 309parallel
Strand 6
B
313 316anti-parallel
Strand 7
B
319 322anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
298 299anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 408first strand
Strand 2
B
383 386parallel
Strand 3
B
438 443parallel
Strand 4
B
465 470parallel
Strand 5
B
533 539parallel
Strand 6
B
507 512parallel
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