Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6EFK entry
There are 4 chains in PDB entry 6EFK
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
SER 23 | ARG 154 |
B
|
SER 23 | ARG 154 |
C
|
ILE 637 | ASP 641 |
D
|
ILE 637 | ASP 641 |
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There are 14
helices in PDB entry 6EFK. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 25 |
39 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 41 |
56 | Right-handed alpha |
| Helix 3 |
AA3 | A
| 59 |
73 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 75 |
90 | Right-handed alpha |
| Helix 5 |
AA5 | A
| 93 |
107 | Right-handed alpha |
| Helix 6 |
AA6 | A
| 109 |
127 | Right-handed alpha |
| Helix 7 |
AA7 | A
| 133 |
152 | Right-handed alpha |
| Helix 8 |
AA8 | B
| 25 |
39 | Right-handed alpha |
| Helix 9 |
AA9 | B
| 41 |
56 | Right-handed alpha |
| Helix 10 |
AB1 | B
| 59 |
73 | Right-handed alpha |
| Helix 11 |
AB2 | B
| 75 |
90 | Right-handed alpha |
| Helix 12 |
AB3 | B
| 93 |
107 | Right-handed alpha |
| Helix 13 |
AB4 | B
| 109 |
128 | Right-handed alpha |
| Helix 14 |
AB5 | B
| 133 |
154 | Right-handed alpha |
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There are no sheets in PDB entry
6EFK
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il