Analysis of interatomic Contacts of Structural Units in PDB entry:
6EFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EFN entry

There is 1 chain in PDB entry 6EFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12GLN 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6EFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 51Right-handed alpha
Helix 2
AA2
A
52 65Right-handed alpha
Helix 3
AA3
A
69 78Right-handed alpha
Helix 4
AA4
A
80 86Right-handed alpha
Helix 5
AA5
A
137 151Right-handed alpha
Helix 6
AA6
A
162 166Right-handed 310
Helix 7
AA7
A
168 180Right-handed alpha
Helix 8
AA8
A
193 204Right-handed alpha
Helix 9
AA9
A
215 224Right-handed alpha
Helix 10
AB1
A
227 242Right-handed alpha
Helix 11
AB2
A
256 258Right-handed 310
Helix 12
AB3
A
259 271Right-handed alpha
Helix 13
AB4
A
283 288Right-handed 310
Helix 14
AB5
A
294 313Right-handed alpha
Helix 15
AB6
A
365 370Right-handed alpha
Helix 16
AB7
A
371 382Right-handed alpha
Helix 17
AB8
A
387 391Right-handed 310
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There are 2 sheets in PDB entry 6EFN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
14 19anti-parallel
Strand 4
A
96 99parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
274 279parallel
Strand 3
A
246 252parallel
Strand 4
A
206 211parallel
Strand 5
A
182 187parallel
Strand 6
A
155 159parallel
Strand 7
A
108 112parallel
Strand 8
A
339 342parallel
Strand 9
A
347 349anti-parallel
Strand 10
A
359 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il