Analysis of interatomic Contacts of Structural Units in PDB entry:
6EG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EG8 entry

There are 6 chains in PDB entry 6EG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ASN 340
B	SER 0	ASN 340
C	SER 8	LYS 64
D	SER 0	ASN 340
E	ASN 5	LYS 64
F	GLY 1	ASP 163

There are100 helices in PDB entry 6EG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	25	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	B	2	26	Right-handed alpha
Helix 4	AA4	B	29	34	Right-handed alpha
Helix 5	AA5	C	9	24	Right-handed alpha
Helix 6	AA6	C	29	45	Right-handed alpha
Helix 7	AA7	C	46	48	Right-handed 310
Helix 8	AA8	D	2	25	Right-handed alpha
Helix 9	AA9	D	29	34	Right-handed alpha
Helix 10	AB1	D	35	37	Right-handed 310
Helix 11	AB2	E	7	24	Right-handed alpha
Helix 12	AB3	E	29	44	Right-handed alpha
Helix 13	AB4	E	45	48	Right-handed 310
Helix 14	AB5	E	55	59	Right-handed 310
Helix 15	AB6	F	2	24	Right-handed alpha
Helix 16	AB7	F	29	34	Right-handed alpha
Helix 17	AB8	G	9	24	Right-handed alpha
Helix 18	AB9	G	29	44	Right-handed alpha
Helix 19	AC1	G	45	48	Right-handed 310
Helix 20	AC2	G	55	59	Right-handed 310
Helix 21	AC3	H	8	24	Right-handed alpha
Helix 22	AC4	H	29	44	Right-handed alpha
Helix 23	AC5	I	10	39	Right-handed alpha
Helix 24	AC6	I	52	65	Right-handed alpha
Helix 25	AC7	I	70	110	Right-handed alpha
Helix 26	AC8	I	121	123	Right-handed 310
Helix 27	AC9	I	124	134	Right-handed alpha
Helix 28	AD1	I	143	155	Right-handed alpha
Helix 29	AD2	I	156	165	Right-handed alpha
Helix 30	AD3	I	166	169	Right-handed 310
Helix 31	AD4	I	174	180	Right-handed alpha
Helix 32	AD5	I	181	187	Right-handed alpha
Helix 33	AD6	I	193	200	Right-handed alpha
Helix 34	AD7	I	232	239	Right-handed 310
Helix 35	AD8	I	264	278	Right-handed alpha
Helix 36	AD9	I	279	283	Right-handed 310
Helix 37	AE1	I	293	304	Right-handed alpha
Helix 38	AE2	I	307	312	Right-handed alpha
Helix 39	AE3	I	313	316	Right-handed 310
Helix 40	AE4	I	331	350	Right-handed alpha
Helix 41	AE5	I	368	379	Right-handed alpha
Helix 42	AE6	I	379	391	Right-handed alpha
Helix 43	AE7	J	11	38	Right-handed alpha
Helix 44	AE8	J	52	65	Right-handed alpha
Helix 45	AE9	J	70	113	Right-handed alpha
Helix 46	AF1	J	121	123	Right-handed 310
Helix 47	AF2	J	124	134	Right-handed alpha
Helix 48	AF3	J	143	155	Right-handed alpha
Helix 49	AF4	J	156	165	Right-handed alpha
Helix 50	AF5	J	166	169	Right-handed 310
Helix 51	AF6	J	174	180	Right-handed alpha
Helix 52	AF7	J	181	187	Right-handed alpha
Helix 53	AF8	J	193	200	Right-handed alpha
Helix 54	AF9	J	232	239	Right-handed 310
Helix 55	AG1	J	251	255	Right-handed 310
Helix 56	AG2	J	264	278	Right-handed alpha
Helix 57	AG3	J	293	304	Right-handed alpha
Helix 58	AG4	J	307	311	Right-handed 310
Helix 59	AG5	J	312	317	Right-handed 310
Helix 60	AG6	J	331	350	Right-handed alpha
Helix 61	AG7	J	368	378	Right-handed alpha
Helix 62	AG8	J	379	391	Right-handed alpha
Helix 63	AG9	K	11	39	Right-handed alpha
Helix 64	AH1	K	52	65	Right-handed alpha
Helix 65	AH2	K	70	113	Right-handed alpha
Helix 66	AH3	K	121	123	Right-handed 310
Helix 67	AH4	K	124	134	Right-handed alpha
Helix 68	AH5	K	143	156	Right-handed alpha
Helix 69	AH6	K	156	165	Right-handed alpha
Helix 70	AH7	K	166	169	Right-handed 310
Helix 71	AH8	K	174	180	Right-handed alpha
Helix 72	AH9	K	181	186	Right-handed alpha
Helix 73	AI1	K	193	200	Right-handed alpha
Helix 74	AI2	K	232	239	Right-handed 310
Helix 75	AI3	K	251	255	Right-handed 310
Helix 76	AI4	K	264	278	Right-handed alpha
Helix 77	AI5	K	293	304	Right-handed alpha
Helix 78	AI6	K	307	312	Right-handed alpha
Helix 79	AI7	K	313	318	Right-handed 310
Helix 80	AI8	K	331	350	Right-handed alpha
Helix 81	AI9	K	368	391	Right-handed alpha
Helix 82	AJ1	L	12	39	Right-handed alpha
Helix 83	AJ2	L	52	65	Right-handed alpha
Helix 84	AJ3	L	70	113	Right-handed alpha
Helix 85	AJ4	L	121	123	Right-handed 310
Helix 86	AJ5	L	124	134	Right-handed alpha
Helix 87	AJ6	L	143	155	Right-handed alpha
Helix 88	AJ7	L	156	164	Right-handed alpha
Helix 89	AJ8	L	165	169	Right-handed 310
Helix 90	AJ9	L	174	180	Right-handed alpha
Helix 91	AK1	L	181	186	Right-handed alpha
Helix 92	AK2	L	193	200	Right-handed alpha
Helix 93	AK3	L	232	239	Right-handed 310
Helix 94	AK4	L	251	255	Right-handed 310
Helix 95	AK5	L	264	278	Right-handed alpha
Helix 96	AK6	L	293	304	Right-handed alpha
Helix 97	AK7	L	307	311	Right-handed 310
Helix 98	AK8	L	312	318	Right-handed 310
Helix 99	AK9	L	331	350	Right-handed alpha
Helix 100	AL1	L	368	391	Right-handed alpha

There are 32 sheets in PDB entry 6EG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	336	339	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	63	first strand
Strand 2	A	69	74	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	121	125	anti-parallel
Strand 4	A	135	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	151	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	166	170	anti-parallel
Strand 4	A	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	208	212	anti-parallel
Strand 4	A	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	234	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	250	254	anti-parallel
Strand 4	A	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	278	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	294	298	anti-parallel
Strand 4	A	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	336	339	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	88	94	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	135	139	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	165	170	anti-parallel
Strand 4	D	175	181	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	218	223	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	259	264	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	304	308	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	51	first strand
Strand 2	F	336	339	anti-parallel
Strand 3	F	327	331	anti-parallel
Strand 4	F	315	320	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	63	first strand
Strand 2	F	69	74	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	88	94	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	105	first strand
Strand 2	F	111	116	anti-parallel
Strand 3	F	121	125	anti-parallel
Strand 4	F	135	139	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	151	first strand
Strand 2	F	156	161	anti-parallel
Strand 3	F	166	170	anti-parallel
Strand 4	F	175	180	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	192	first strand
Strand 2	F	198	203	anti-parallel
Strand 3	F	208	212	anti-parallel
Strand 4	F	218	222	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	229	234	first strand
Strand 2	F	240	245	anti-parallel
Strand 3	F	250	254	anti-parallel
Strand 4	F	259	264	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	278	first strand
Strand 2	F	284	289	anti-parallel
Strand 3	F	294	298	anti-parallel
Strand 4	F	304	308	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	207	214	first strand
Strand 2	I	217	224	anti-parallel
Strand 3	I	41	46	parallel
Strand 4	I	243	249	parallel
Strand 5	I	287	292	parallel
Strand 6	I	359	363	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	207	214	first strand
Strand 2	J	217	224	anti-parallel
Strand 3	J	40	46	parallel
Strand 4	J	243	249	parallel
Strand 5	J	287	292	parallel
Strand 6	J	359	363	parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	214	first strand
Strand 2	K	217	224	anti-parallel
Strand 3	K	40	46	parallel
Strand 4	K	243	249	parallel
Strand 5	K	287	292	parallel
Strand 6	K	359	363	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	214	first strand
Strand 2	L	217	224	anti-parallel
Strand 3	L	40	47	parallel
Strand 4	L	243	249	parallel
Strand 5	L	287	292	parallel
Strand 6	L	359	363	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EG8