Analysis of interatomic Contacts of Structural Units in PDB entry:
6EGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EGA entry

There are 2 chains in PDB entry 6EGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 166ALA 459
B
 ARG 164ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6EGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 177Right-handed alpha
Helix 2
AA2
A
226 240Right-handed alpha
Helix 3
AA3
A
269 275Right-handed alpha
Helix 4
AA4
A
276 280Right-handed 310
Helix 5
AA5
A
284 305Right-handed alpha
Helix 6
AA6
A
356 362Right-handed alpha
Helix 7
AA7
A
365 383Right-handed alpha
Helix 8
AA8
A
395 397Right-handed 310
Helix 9
AA9
A
398 405Right-handed alpha
Helix 10
AB1
A
409 413Right-handed 310
Helix 11
AB2
A
422 437Right-handed alpha
Helix 12
AB3
A
446 459Right-handed alpha
Helix 13
AB4
B
169 177Right-handed alpha
Helix 14
AB5
B
227 240Right-handed alpha
Helix 15
AB6
B
269 275Right-handed alpha
Helix 16
AB7
B
276 280Right-handed 310
Helix 17
AB8
B
284 305Right-handed alpha
Helix 18
AB9
B
356 361Right-handed alpha
Helix 19
AC1
B
365 383Right-handed alpha
Helix 20
AC2
B
395 397Right-handed 310
Helix 21
AC3
B
398 405Right-handed alpha
Helix 22
AC4
B
409 413Right-handed 310
Helix 23
AC5
B
422 437Right-handed alpha
Helix 24
AC6
B
440 444Right-handed 310
Helix 25
AC7
B
446 458Right-handed alpha
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There are 4 sheets in PDB entry 6EGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
199 205anti-parallel
Strand 3
A
208 214anti-parallel
Strand 4
A
259 263anti-parallel
Strand 5
A
248 252anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
248 252parallel
Strand 3
B
258 263anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
199 205anti-parallel
Strand 6
B
191 193anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il