Analysis of interatomic Contacts of Structural Units in PDB entry:
6EGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EGF entry

There is 1 chain in PDB entry 6EGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 164SER 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6EGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
169 177Right-handed alpha
Helix 2
AA2
B
184 188Right-handed 310
Helix 3
AA3
B
223 240Right-handed alpha
Helix 4
AA4
B
269 275Right-handed alpha
Helix 5
AA5
B
276 280Right-handed 310
Helix 6
AA6
B
284 305Right-handed alpha
Helix 7
AA7
B
313 315Right-handed 310
Helix 8
AA8
B
331 337Right-handed alpha
Helix 9
AA9
B
356 361Right-handed alpha
Helix 10
AB1
B
365 383Right-handed alpha
Helix 11
AB2
B
395 397Right-handed 310
Helix 12
AB3
B
398 405Right-handed alpha
Helix 13
AB4
B
409 414Right-handed alpha
Helix 14
AB5
B
422 437Right-handed alpha
Helix 15
AB6
B
440 444Right-handed 310
Helix 16
AB7
B
446 458Right-handed alpha
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There are 2 sheets in PDB entry 6EGF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
248 252parallel
Strand 3
B
257 263anti-parallel
Strand 4
B
208 217anti-parallel
Strand 5
B
198 205anti-parallel
Strand 6
B
191 195anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il