Analysis of interatomic Contacts of Structural Units in PDB entry:
6EIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EIB entry

There are 4 chains in PDB entry 6EIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 159
B
 LEU 2GLU 161
C
 THR 3SER 159
D
 GLN 4SER 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6EIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 6Right-handed alpha
Helix 2
AA2
A
7 26Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
47 66Right-handed alpha
Helix 5
AA5
A
88 106Right-handed alpha
Helix 6
AA6
A
130 147Right-handed alpha
Helix 7
AA7
B
7 25Right-handed alpha
Helix 8
AA8
B
38 47Right-handed alpha
Helix 9
AA9
B
47 66Right-handed alpha
Helix 10
AB1
B
88 106Right-handed alpha
Helix 11
AB2
B
130 147Right-handed alpha
Helix 12
AB3
C
7 26Right-handed alpha
Helix 13
AB4
C
38 47Right-handed alpha
Helix 14
AB5
C
47 66Right-handed alpha
Helix 15
AB6
C
88 106Right-handed alpha
Helix 16
AB7
C
130 148Right-handed alpha
Helix 17
AB8
D
7 26Right-handed alpha
Helix 18
AB9
D
38 47Right-handed alpha
Helix 19
AC1
D
47 66Right-handed alpha
Helix 20
AC2
D
88 106Right-handed alpha
Helix 21
AC3
D
130 148Right-handed alpha
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There are 5 sheets in PDB entry 6EIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
117 123anti-parallel
Strand 5
A
152 155parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
79 85anti-parallel
Strand 3
B
29 36anti-parallel
Strand 4
B
117 123anti-parallel
Strand 5
B
153 155parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 74first strand
Strand 2
C
79 85anti-parallel
Strand 3
C
29 36anti-parallel
Strand 4
C
117 123anti-parallel
Strand 5
C
153 155parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 74first strand
Strand 2
D
79 85anti-parallel
Strand 3
D
29 36anti-parallel
Strand 4
D
117 123anti-parallel
Strand 5
D
153 155parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 108first strand
Strand 2
D
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il