Analysis of interatomic Contacts of Structural Units in PDB entry:
6EIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EIJ entry

There are 8 chains in PDB entry 6EIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 134	GLN 320
A	ILE 322	LYS 480
B	ARG 133	GLN 320
B	ILE 322	LYS 480
C	VAL 135	GLN 320
C	ILE 322	PHE 479
D	LYS 134	GLN 320
D	ILE 322	TRP 345

There are 63 helices in PDB entry 6EIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	193	213	Right-handed alpha
Helix 2	AA2	A	244	252	Right-handed alpha
Helix 3	AA3	A	258	277	Right-handed alpha
Helix 4	AA4	A	289	291	Right-handed 310
Helix 5	AA5	A	324	328	Right-handed 310
Helix 6	AA6	A	329	334	Right-handed alpha
Helix 7	AA7	A	340	357	Right-handed alpha
Helix 8	AA8	A	365	378	Right-handed alpha
Helix 9	AA9	A	381	386	Right-handed alpha
Helix 10	AB1	A	390	394	Right-handed alpha
Helix 11	AB2	A	422	427	Right-handed alpha
Helix 12	AB3	A	433	437	Right-handed 310
Helix 13	AB4	A	445	460	Right-handed alpha
Helix 14	AB5	A	469	474	Right-handed alpha
Helix 15	AB6	A	475	480	Right-handed 310
Helix 16	AB7	B	136	140	Right-handed 310
Helix 17	AB8	B	193	214	Right-handed alpha
Helix 18	AB9	B	244	252	Right-handed alpha
Helix 19	AC1	B	258	277	Right-handed alpha
Helix 20	AC2	B	289	291	Right-handed 310
Helix 21	AC3	B	324	328	Right-handed 310
Helix 22	AC4	B	329	334	Right-handed alpha
Helix 23	AC5	B	340	357	Right-handed alpha
Helix 24	AC6	B	365	378	Right-handed alpha
Helix 25	AC7	B	381	388	Right-handed alpha
Helix 26	AC8	B	390	393	Right-handed 310
Helix 27	AC9	B	422	428	Right-handed alpha
Helix 28	AD1	B	433	437	Right-handed 310
Helix 29	AD2	B	445	460	Right-handed alpha
Helix 30	AD3	B	469	474	Right-handed alpha
Helix 31	AD4	C	136	140	Right-handed 310
Helix 32	AD5	C	193	212	Right-handed alpha
Helix 33	AD6	C	215	221	Right-handed 310
Helix 34	AD7	C	244	252	Right-handed alpha
Helix 35	AD8	C	258	277	Right-handed alpha
Helix 36	AD9	C	289	291	Right-handed 310
Helix 37	AE1	C	307	311	Right-handed 310
Helix 38	AE2	C	324	328	Right-handed 310
Helix 39	AE3	C	329	334	Right-handed alpha
Helix 40	AE4	C	340	357	Right-handed alpha
Helix 41	AE5	C	365	378	Right-handed alpha
Helix 42	AE6	C	381	386	Right-handed alpha
Helix 43	AE7	C	390	394	Right-handed alpha
Helix 44	AE8	C	422	428	Right-handed alpha
Helix 45	AE9	C	433	437	Right-handed 310
Helix 46	AF1	C	445	460	Right-handed alpha
Helix 47	AF2	C	469	475	Right-handed alpha
Helix 48	AF3	D	136	140	Right-handed 310
Helix 49	AF4	D	193	213	Right-handed alpha
Helix 50	AF5	D	215	221	Right-handed 310
Helix 51	AF6	D	244	252	Right-handed alpha
Helix 52	AF7	D	258	277	Right-handed alpha
Helix 53	AF8	D	289	291	Right-handed 310
Helix 54	AF9	D	324	328	Right-handed 310
Helix 55	AG1	D	329	334	Right-handed alpha
Helix 56	AG2	D	340	357	Right-handed alpha
Helix 57	AG3	D	365	378	Right-handed alpha
Helix 58	AG4	D	381	386	Right-handed alpha
Helix 59	AG5	D	390	394	Right-handed alpha
Helix 60	AG6	D	422	428	Right-handed alpha
Helix 61	AG7	D	433	437	Right-handed 310
Helix 62	AG8	D	445	460	Right-handed alpha
Helix 63	AG9	D	469	475	Right-handed alpha

There are 16 sheets in PDB entry 6EIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	159	168	anti-parallel
Strand 3	A	171	178	anti-parallel
Strand 4	A	183	190	anti-parallel
Strand 5	A	233	239	anti-parallel
Strand 6	A	224	230	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	312	313	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	303	305	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	403	405	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	159	168	anti-parallel
Strand 3	B	171	178	anti-parallel
Strand 4	B	183	190	anti-parallel
Strand 5	B	233	239	anti-parallel
Strand 6	B	224	230	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	312	313	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	303	305	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	404	405	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	159	167	anti-parallel
Strand 3	C	171	178	anti-parallel
Strand 4	C	183	190	anti-parallel
Strand 5	C	233	239	anti-parallel
Strand 6	C	224	230	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	312	313	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	295	first strand
Strand 2	C	303	305	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	403	405	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	159	167	anti-parallel
Strand 3	D	171	178	anti-parallel
Strand 4	D	183	190	anti-parallel
Strand 5	D	233	239	anti-parallel
Strand 6	D	224	230	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	312	313	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	295	first strand
Strand 2	D	303	305	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	403	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EIJ