Analysis of interatomic Contacts of Structural Units in PDB entry:
6EJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EJ2 entry

There is 1 chain in PDB entry 6EJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 385TYR 793
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6EJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
408 409Right-handed 310
Helix 2
AA2
A
410 412Right-handed 310
Helix 3
AA3
A
462 466Right-handed 310
Helix 4
AA4
A
532 536Right-handed 310
Helix 5
AA5
A
544 553Right-handed alpha
Helix 6
AA6
A
589 591Right-handed 310
Helix 7
AA7
A
625 631Right-handed 310
Helix 8
AA8
A
647 661Right-handed alpha
Helix 9
AA9
A
667 672Right-handed alpha
Helix 10
AB1
A
685 689Right-handed 310
Helix 11
AB2
A
710 714Right-handed alpha
Helix 12
AB3
A
743 748Right-handed alpha
Helix 13
AB4
A
756 758Right-handed 310
Helix 14
AB5
A
787 792Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6EJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 480first strand
Strand 2
A
483 495anti-parallel
Strand 3
A
423 429anti-parallel
Strand 4
A
415 418anti-parallel
Strand 5
A
578 585anti-parallel
Strand 6
A
559 565anti-parallel
Strand 7
A
750 755anti-parallel
Strand 8
A
760 766anti-parallel
Strand 9
A
593 601anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 480first strand
Strand 2
A
483 495anti-parallel
Strand 3
A
504 515anti-parallel
Strand 4
A
447 450parallel
Strand 5
A
526 529anti-parallel
Strand 6
A
434 441parallel
Strand 7
A
423 429anti-parallel
Strand 8
A
415 418anti-parallel
Strand 9
A
578 585anti-parallel
Strand 10
A
559 565anti-parallel
Strand 11
A
750 755anti-parallel
Strand 12
A
760 766anti-parallel
Strand 13
A
593 601anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 610first strand
Strand 2
A
634 636anti-parallel
Strand 3
A
740 742parallel
Strand 4
A
643 646anti-parallel
Strand 5
A
733 736parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
612 617anti-parallel
Strand 3
A
692 697anti-parallel
Strand 4
A
703 709anti-parallel
Strand 5
A
778 784anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 679first strand
Strand 2
A
727 731anti-parallel
Strand 3
A
715 718anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il