Analysis of interatomic Contacts of Structural Units in PDB entry:
6EJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EJ5 entry

There is 1 chain in PDB entry 6EJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 921
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6EJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
298 323Right-handed alpha
Helix 2
AA2
A
428 443Right-handed alpha
Helix 3
AA3
A
449 457Right-handed alpha
Helix 4
AA4
A
483 495Right-handed alpha
Helix 5
AA5
A
508 523Right-handed alpha
Helix 6
AA6
A
536 547Right-handed alpha
Helix 7
AA7
A
571 576Right-handed alpha
Helix 8
AA8
A
582 592Right-handed alpha
Helix 9
AA9
A
600 619Right-handed alpha
Helix 10
AB1
A
648 652Right-handed 310
Helix 11
AB2
A
653 662Right-handed alpha
Helix 12
AB3
A
683 690Right-handed alpha
Helix 13
AB4
A
694 703Right-handed alpha
Helix 14
AB5
A
720 728Right-handed alpha
Helix 15
AB6
A
778 791Right-handed alpha
Helix 16
AB7
A
797 799Right-handed 310
Helix 17
AB8
A
807 818Right-handed alpha
Helix 18
AB9
A
836 840Right-handed 310
Helix 19
AC1
A
866 875Right-handed alpha
Helix 20
AC2
A
886 891Right-handed alpha
Helix 21
AC3
A
893 906Right-handed alpha
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There are 5 sheets in PDB entry 6EJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
342 345anti-parallel
Strand 3
A
403 407anti-parallel
Strand 4
A
385 391anti-parallel
Strand 5
A
372 377anti-parallel
Strand 6
A
420 424anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 554first strand
Strand 2
A
623 627parallel
Strand 3
A
529 532parallel
Strand 4
A
643 646parallel
Strand 5
A
667 672parallel
Strand 6
A
498 502parallel
Strand 7
A
707 708parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
757 761first strand
Strand 2
A
877 885parallel
Strand 3
A
845 851parallel
Strand 4
A
801 804parallel
Strand 5
A
833 835parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 767first strand
Strand 2
A
776 777anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
910 911first strand
Strand 2
A
918 919anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il