Analysis of interatomic Contacts of Structural Units in PDB entry:
6EJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EJC entry

There is 1 chain in PDB entry 6EJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 253ALA 901
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6EJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
261 271Right-handed alpha
Helix 2
AA2
A
273 289Right-handed alpha
Helix 3
AA3
A
314 319Right-handed 310
Helix 4
AA4
A
338 350Right-handed alpha
Helix 5
AA5
A
364 378Right-handed alpha
Helix 6
AA6
A
395 411Right-handed alpha
Helix 7
AA7
A
431 442Right-handed alpha
Helix 8
AA8
A
454 463Right-handed alpha
Helix 9
AA9
A
500 509Right-handed alpha
Helix 10
AB1
A
511 521Right-handed alpha
Helix 11
AB2
A
522 524Right-handed 310
Helix 12
AB3
A
526 529Right-handed 310
Helix 13
AB4
A
530 539Right-handed alpha
Helix 14
AB5
A
541 543Right-handed 310
Helix 15
AB6
A
580 589Right-handed 310
Helix 16
AB7
A
606 618Right-handed alpha
Helix 17
AB8
A
638 644Right-handed 310
Helix 18
AB9
A
645 667Right-handed alpha
Helix 19
AC1
A
851 860Right-handed alpha
Helix 20
AC2
A
872 876Right-handed 310
Helix 21
AC3
A
884 896Right-handed alpha
Helix 22
AC4
A
898 913Right-handed alpha
Helix 23
AC5
A
934 936Right-handed 310
Helix 24
AC6
A
944 948Right-handed 310
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There are 10 sheets in PDB entry 6EJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
355 360parallel
Strand 3
A
328 334parallel
Strand 4
A
418 423parallel
Strand 5
A
497 499anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 428first strand
Strand 2
A
596 598anti-parallel
Strand 3
A
551 553parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
545 547parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 471first strand
Strand 2
A
474 480anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
B
216 218anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 636first strand
Strand 2
A
677 691anti-parallel
Strand 3
A
694 706anti-parallel
Strand 4
A
711 721anti-parallel
Strand 5
A
914 921anti-parallel
Strand 6
A
931 932parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 727first strand
Strand 2
A
830 839anti-parallel
Strand 3
A
819 827anti-parallel
Strand 4
A
778 785anti-parallel
Strand 5
A
791 799anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 743first strand
Strand 2
A
767 772anti-parallel
Strand 3
A
805 808anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 747first strand
Strand 2
A
752 753anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
844 845first strand
Strand 2
A
848 849anti-parallel
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