Analysis of interatomic Contacts of Structural Units in PDB entry:
6EJG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6EJG entry

There are 4 chains in PDB entry 6EJG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 113	LYS 201
B	PHE 113	LYS 201
C	ASP 39	SER 289
D	ASP 39	SER 289

There are 16 helices in PDB entry 6EJG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	115	137	Right-handed alpha
Helix 2	AA2	A	140	155	Right-handed alpha
Helix 3	AA3	A	159	161	Right-handed 310
Helix 4	AA4	A	162	172	Right-handed alpha
Helix 5	AA5	A	181	188	Right-handed 310
Helix 6	AA6	A	189	199	Right-handed alpha
Helix 7	AA7	B	115	136	Right-handed alpha
Helix 8	AA8	B	140	154	Right-handed alpha
Helix 9	AA9	B	162	172	Right-handed alpha
Helix 10	AB1	B	181	188	Right-handed 310
Helix 11	AB2	B	189	200	Right-handed alpha
Helix 12	AB3	C	121	125	Right-handed 310
Helix 13	AB4	C	197	200	Right-handed 310
Helix 14	AB5	C	256	260	Right-handed 310
Helix 15	AB6	D	121	125	Right-handed 310
Helix 16	AB7	D	256	260	Right-handed 310

There are 8 sheets in PDB entry 6EJG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	57	63	anti-parallel
Strand 3	C	112	117	anti-parallel
Strand 4	C	104	109	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	52	first strand
Strand 2	C	144	149	parallel
Strand 3	C	127	132	anti-parallel
Strand 4	C	75	80	anti-parallel
Strand 5	C	87	91	anti-parallel
Strand 6	C	95	96	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	175	first strand
Strand 2	C	187	194	anti-parallel
Strand 3	C	247	252	anti-parallel
Strand 4	C	237	242	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	181	first strand
Strand 2	C	283	287	parallel
Strand 3	C	261	267	anti-parallel
Strand 4	C	202	208	anti-parallel
Strand 5	C	215	221	anti-parallel
Strand 6	C	227	229	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	57	63	anti-parallel
Strand 3	D	112	117	anti-parallel
Strand 4	D	104	109	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	144	148	parallel
Strand 3	D	127	132	anti-parallel
Strand 4	D	75	80	anti-parallel
Strand 5	D	87	91	anti-parallel
Strand 6	D	95	96	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	175	first strand
Strand 2	D	187	192	anti-parallel
Strand 3	D	247	252	anti-parallel
Strand 4	D	237	242	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	181	first strand
Strand 2	D	283	287	parallel
Strand 3	D	261	267	anti-parallel
Strand 4	D	202	208	anti-parallel
Strand 5	D	215	221	anti-parallel
Strand 6	D	227	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6EJG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6EJG