Analysis of interatomic Contacts of Structural Units in PDB entry:
6EJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EJI entry

There are 2 chains in PDB entry 6EJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ALA 360
B
 MSE 1ALA 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6EJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
64 86Right-handed alpha
Helix 3
AA3
A
95 106Right-handed alpha
Helix 4
AA4
A
120 124Right-handed 310
Helix 5
AA5
A
126 137Right-handed alpha
Helix 6
AA6
A
138 140Right-handed 310
Helix 7
AA7
A
147 156Right-handed alpha
Helix 8
AA8
A
168 173Right-handed 310
Helix 9
AA9
A
197 207Right-handed alpha
Helix 10
AB1
A
209 214Right-handed alpha
Helix 11
AB2
A
226 238Right-handed alpha
Helix 12
AB3
A
249 257Right-handed alpha
Helix 13
AB4
A
271 276Right-handed alpha
Helix 14
AB5
A
277 280Right-handed 310
Helix 15
AB6
A
291 295Right-handed 310
Helix 16
AB7
A
309 322Right-handed alpha
Helix 17
AB8
A
323 335Right-handed alpha
Helix 18
AB9
A
336 341Right-handed 310
Helix 19
AC1
A
342 360Right-handed alpha
Helix 20
AC2
B
15 29Right-handed alpha
Helix 21
AC3
B
64 86Right-handed alpha
Helix 22
AC4
B
95 106Right-handed alpha
Helix 23
AC5
B
120 124Right-handed 310
Helix 24
AC6
B
126 137Right-handed alpha
Helix 25
AC7
B
138 140Right-handed 310
Helix 26
AC8
B
147 155Right-handed alpha
Helix 27
AC9
B
168 173Right-handed 310
Helix 28
AD1
B
197 207Right-handed alpha
Helix 29
AD2
B
209 216Right-handed alpha
Helix 30
AD3
B
226 238Right-handed alpha
Helix 31
AD4
B
249 257Right-handed alpha
Helix 32
AD5
B
271 276Right-handed alpha
Helix 33
AD6
B
277 280Right-handed 310
Helix 34
AD7
B
291 295Right-handed 310
Helix 35
AD8
B
309 322Right-handed alpha
Helix 36
AD9
B
323 335Right-handed alpha
Helix 37
AE1
B
336 341Right-handed 310
Helix 38
AE2
B
342 360Right-handed alpha
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There are 4 sheets in PDB entry 6EJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
33 38parallel
Strand 3
A
4 9parallel
Strand 4
A
90 94parallel
Strand 5
A
113 116parallel
Strand 6
A
142 145parallel
Strand 7
A
161 163parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
217 221parallel
Strand 3
A
185 189parallel
Strand 4
A
259 262parallel
Strand 5
A
282 286parallel
Strand 6
A
303 305parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
33 38parallel
Strand 3
B
4 9parallel
Strand 4
B
90 94parallel
Strand 5
B
113 116parallel
Strand 6
B
142 145parallel
Strand 7
B
161 163parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 243first strand
Strand 2
B
217 221parallel
Strand 3
B
185 189parallel
Strand 4
B
259 262parallel
Strand 5
B
282 286parallel
Strand 6
B
303 305parallel
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