Analysis of interatomic Contacts of Structural Units in PDB entry:
6EJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6EJK entry

There are 2 chains in PDB entry 6EJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ALA 360
B
 MSE 1ALA 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6EJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
64 85Right-handed alpha
Helix 3
AA3
A
95 107Right-handed alpha
Helix 4
AA4
A
126 137Right-handed alpha
Helix 5
AA5
A
138 140Right-handed 310
Helix 6
AA6
A
147 155Right-handed alpha
Helix 7
AA7
A
169 174Right-handed alpha
Helix 8
AA8
A
197 207Right-handed alpha
Helix 9
AA9
A
209 216Right-handed alpha
Helix 10
AB1
A
226 238Right-handed alpha
Helix 11
AB2
A
249 257Right-handed alpha
Helix 12
AB3
A
271 276Right-handed alpha
Helix 13
AB4
A
277 279Right-handed 310
Helix 14
AB5
A
291 296Right-handed alpha
Helix 15
AB6
A
309 322Right-handed alpha
Helix 16
AB7
A
323 335Right-handed alpha
Helix 17
AB8
A
336 341Right-handed 310
Helix 18
AB9
A
342 358Right-handed alpha
Helix 19
AC1
B
16 29Right-handed alpha
Helix 20
AC2
B
63 85Right-handed alpha
Helix 21
AC3
B
95 107Right-handed alpha
Helix 22
AC4
B
126 137Right-handed alpha
Helix 23
AC5
B
138 140Right-handed 310
Helix 24
AC6
B
147 155Right-handed alpha
Helix 25
AC7
B
169 174Right-handed alpha
Helix 26
AC8
B
197 207Right-handed alpha
Helix 27
AC9
B
209 216Right-handed alpha
Helix 28
AD1
B
226 237Right-handed alpha
Helix 29
AD2
B
249 257Right-handed alpha
Helix 30
AD3
B
271 276Right-handed alpha
Helix 31
AD4
B
277 279Right-handed 310
Helix 32
AD5
B
291 296Right-handed alpha
Helix 33
AD6
B
309 322Right-handed alpha
Helix 34
AD7
B
323 335Right-handed alpha
Helix 35
AD8
B
336 341Right-handed 310
Helix 36
AD9
B
342 359Right-handed alpha
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There are 8 sheets in PDB entry 6EJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
33 38parallel
Strand 3
A
4 9parallel
Strand 4
A
90 93parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
162 163parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
217 221parallel
Strand 3
A
185 189parallel
Strand 4
A
259 262parallel
Strand 5
A
282 286parallel
Strand 6
A
303 305parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
289 290parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
33 38parallel
Strand 3
B
4 9parallel
Strand 4
B
90 93parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
162 163parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
217 221parallel
Strand 3
B
185 189parallel
Strand 4
B
259 262parallel
Strand 5
B
282 286parallel
Strand 6
B
303 305parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
289 290parallel
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